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PDBsum entry 1amy

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Cleft analysis for: 1amy PDB id
1amy
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 883.41 0.72 69.66 1 12.17 1 8.66 4 3 3 2 4 5 0 0  
2 1228.92 0.00 59.96 8 6.63 8 10.11 1 5 4 5 4 2 5 0  
3 760.22 0.00 54.95 10 8.39 4 8.95 3 3 2 1 3 3 4 0  
4 731.95 0.00 67.28 2 7.00 7 6.52 9 4 4 5 1 7 2 0  
5 735.33 0.00 61.56 5 7.36 6 8.19 5 1 2 3 3 3 5 0  
6 562.36 0.00 61.36 6 10.58 2 9.07 2 2 2 2 4 2 4 0  
7 587.67 0.00 62.38 4 8.02 5 8.14 6 1 2 2 6 2 4 0  
8 506.25 0.00 64.44 3 8.62 3 6.24 10 2 2 3 4 2 1 0  
9 460.69 0.00 60.00 7 6.49 9 7.86 7 2 3 1 1 2 2 0  
10 434.11 0.00 58.56 9 3.35 10 7.04 8 3 1 5 1 2 3 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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