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PDBsum entry 1alh

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1alh calculated with MOLE 2.0 PDB id
1alh
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.45 1.58 15.7 -1.07 -0.29 8.4 84 0 2 1 3 1 1 0  
2 1.26 1.29 16.4 -1.34 -0.48 8.9 82 0 2 1 2 1 1 0  
3 1.31 1.31 21.2 -1.39 -0.75 18.8 87 1 3 0 2 0 0 0  
4 1.31 1.31 18.1 -1.73 -0.73 24.3 87 2 2 0 2 0 0 0  
5 1.31 1.31 28.9 -1.52 -0.78 17.1 89 1 3 2 2 0 0 0  
6 1.20 1.42 18.1 -0.27 -0.22 9.2 79 1 1 2 4 0 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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