PDBsum entry 1a88 Go to PDB code:  Tunnel analysis for: 1a88 calculated with MOLE 2.0 PDB id 1a88 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.53 25.4 -0.71 -0.41 9.9 90 1 3 5 5 0 0 0   2 1.17 2.39 28.0 0.58 0.39 11.7 81 2 1 3 6 3 1 0   3 1.25 1.45 17.5 0.99 0.43 6.2 73 2 0 1 3 3 1 0   4 1.25 1.45 20.6 0.67 0.38 9.3 72 2 2 1 3 4 1 0   5 1.28 1.48 17.0 0.95 0.44 6.3 73 2 0 1 3 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.