spacer
spacer

PDBsum entry 1a6e

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1a6e calculated with MOLE 2.0 PDB id
1a6e
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.22 2.54 18.2 -1.38 -0.25 25.2 82 3 4 0 1 1 1 0  
2 1.17 1.24 27.7 -0.63 -0.14 13.6 75 2 2 1 2 3 1 0  
3 1.22 2.54 31.1 -0.80 -0.17 19.7 85 3 3 0 3 1 1 0  
4 1.31 1.46 18.6 -0.22 0.23 18.8 96 3 1 2 4 0 0 0  
5 1.14 1.14 17.5 2.46 1.02 3.9 81 0 1 1 6 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer