PDBsum entry 1a1j Go to PDB code:  Pore analysis for: 1a1j calculated with MOLE 2.0 PDB id 1a1j Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 pore, coloured by radius 1 pore, coloured by radius 1 pore, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.19 115.0 -1.52 -0.37 23.0 82 12 4 3 3 4 2 0  DA 1 B DC 3 B DG 6 B DG 7 B DG 8 B DC 9 B DA 52 C DC 53 C DG 54 C DC 55 C DC 56 C DC 57 C DA 58 C DC 59 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.