PDBsum entry 1a0j

Pore analysis for: 1a0j calculated with

MOLE 2.0

PDB id

1a0j

Pores calculated on whole structure

Pores calculated excluding ligands

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16 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.18

1.31

29.0

-1.91

-0.72

9.8

84

3

0

7

0

0

1

1

2

1.25

1.44

29.9

0.25

-0.13

4.2

86

1

0

1

5

2

0

0

3

2.81

2.81

30.7

-2.09

-0.25

22.0

73

4

1

3

1

4

0

0

SO4 248 B

4

1.26

1.43

31.8

0.43

0.02

3.6

90

1

0

4

5

2

1

0

5

1.38

1.37

33.1

0.26

0.02

2.5

89

1

0

4

4

2

1

0

6

1.69

1.69

33.3

-1.17

-0.05

15.1

74

5

0

4

3

5

0

0

SO4 248 A SO4 248 C

7

2.01

2.12

43.1

-0.92

-0.43

8.0

89

2

0

9

4

2

2

0

8

2.07

2.10

56.7

-1.92

-0.06

21.2

76

7

2

6

1

7

0

0

SO4 248 B

9

1.56

1.65

60.3

-1.16

-0.28

10.8

80

8

0

10

5

6

1

0

SO4 248 A

10

1.58

1.71

63.4

-0.95

-0.24

10.6

78

8

0

8

7

8

1

0

SO4 248 A

11

1.54

1.71

67.9

-0.86

-0.23

6.1

79

4

0

10

7

6

1

0

SO4 248 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.