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PDBsum entry 1a02

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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 1a02 calculated with MOLE 2.0 PDB id
1a02
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.28 1.52 25.2 -1.89 -0.63 17.3 82 2 1 3 0 2 0 0  DA 4005 A DA 4006 A DA 5014 B DT 5015 B DT 5016 B
DT 5017 B
2 1.17 1.29 43.4 -2.34 -0.53 27.0 86 7 1 5 2 1 0 0  DT 4013 A DT 4014 A DT 5016 B
3 1.18 1.28 46.6 -1.92 -0.62 17.9 85 4 3 6 2 1 1 0  DT 5016 B
4 1.18 1.29 56.9 -1.64 -0.33 24.8 82 10 3 4 3 1 0 0  DT 4011 A DG 4012 A DT 5016 B
5 1.17 1.30 60.5 -1.52 -0.32 22.4 84 9 1 4 5 1 0 0  DG 4012 A DT 5006 B DG 5007 B DT 5016 B
6 1.19 1.21 70.0 -1.89 -0.51 22.9 86 10 1 4 3 1 0 0  DG 4012 A DT 4013 A DA 5009 B DA 5010 B DT 5016 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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