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PDBsum entry 1yrv

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protein links
Ligase PDB id
1yrv
Jmol
Contents
Protein chain
153 a.a. *
Waters ×76
* Residue conservation analysis
PDB id:
1yrv
Name: Ligase
Title: Novel ubiquitin-conjugating enzyme
Structure: Ubiquitin-conjugating ligase mgc351130. Chain: a. Fragment: residues 1-150. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: mgc35130. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008. Other_details: the n-terminal cloning tag mgsshhhhhhssglvpr not been removed from the protein
Biol. unit: Tetramer (from PQS)
Resolution:
2.18Å     R-factor:   0.244     R-free:   0.294
Authors: J.R.Walker,J.Choe,G.V.Avvakumov,E.M.Newman,F.Mackenzie,M.Sun C.Arrowsmith,A.Edwards,A.Bochkarev,S.Dhe-Paganon,Structural Consortium (Sgc)
Key ref: Y.Sheng et al. (2012). A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Mol Cell Proteomics, 11, 329-341. PubMed id: 22496338
Date:
04-Feb-05     Release date:   22-Mar-05    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q5VVX9  (UBE2U_HUMAN) -  Ubiquitin-conjugating enzyme E2 U
Seq:
Struc:
321 a.a.
153 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.6.3.2.19  - Ubiquitin--protein ligase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine
ATP
+ ubiquitin
+ protein lysine
= AMP
+ diphosphate
+ protein N-ubiquityllysine
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
Mol Cell Proteomics 11:329-341 (2012)
PubMed id: 22496338  
 
 
A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen.
Y.Sheng, J.H.Hong, R.Doherty, T.Srikumar, J.Shloush, G.V.Avvakumov, J.R.Walker, S.Xue, D.Neculai, J.W.Wan, S.K.Kim, C.H.Arrowsmith, B.Raught, S.Dhe-Paganon.
 
  ABSTRACT  
 
No abstract given.