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PDBsum entry 1vkp

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protein ligands metals Protein-protein interface(s) links
Hydrolase PDB id
1vkp
Jmol
Contents
Protein chains
365 a.a. *
Ligands
EDO ×13
MPO
Metals
_MG ×2
Waters ×779
* Residue conservation analysis
PDB id:
1vkp
Name: Hydrolase
Title: X-ray structure of gene product from arabidopsis thaliana at5g08170, agmatine iminohydrolase
Structure: Agmatine iminohydrolase. Chain: a, b. Synonym: aih, agmatine deiminase. Engineered: yes
Source: Arabidopsis thaliana. Thale cress. Organism_taxid: 3702. Gene: at5g08170. Expressed in: escherichia coli. Expression_system_taxid: 562
Biol. unit: Dimer (from PQS)
Resolution:
1.53Å     R-factor:   0.148     R-free:   0.174
Authors: G.E.Wesenberg,D.W.Smith,G.N.Phillips Jr.,C.A.Bingman, S.T.M.Allard,Center For Eukaryotic Structural Genomics (Cesg)
Key ref: Center for eukaryotic structural genomics X-Ray structure of gene product from arabidopsis thaliana at5g08170. To be published, .
Date:
15-Jun-04     Release date:   17-Aug-04    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q8GWW7  (AGUA_ARATH) -  Agmatine deiminase
Seq:
Struc:
383 a.a.
365 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.3.5.3.12  - Agmatine deiminase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Agmatine + H2O = N-carbamoylputrescine + NH3
Agmatine
+ H(2)O
= N-carbamoylputrescine
+ NH(3)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     polyamine biosynthetic process   3 terms 
  Biochemical function     hydrolase activity     3 terms