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PDBsum entry 1v3y

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protein links
Hydrolase PDB id
1v3y
Jmol
Contents
Protein chains
170 a.a. *
Waters ×294
* Residue conservation analysis
PDB id:
1v3y
Name: Hydrolase
Title: The crystal structure of peptide deformylase from thermus thermophilus hb8
Structure: Peptide deformylase. Chain: a, b. Synonym: pdf, polypeptide deformylase. Engineered: yes
Source: Thermus thermophilus. Organism_taxid: 274. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
1.81Å     R-factor:   0.173     R-free:   0.208
Authors: M.Kamo,N.Kudo,W.C.Lee,K.Ito,H.Motoshim,M.Tanokura,Riken Structural Genomics/proteomics Initiative (Rsgi)
Key ref: M.Kamo et al. The crystal structure of peptide deformylase from thermus thermophilus hb8. To be published, .
Date:
07-Nov-03     Release date:   28-Dec-04    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P43522  (DEF_THETH) -  Peptide deformylase
Seq:
Struc:
192 a.a.
170 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.3.5.1.88  - Peptide deformylase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Formyl-L-methionyl peptide + H2O = formate + methionyl peptide
Formyl-L-methionyl peptide
+ H(2)O
= formate
+ methionyl peptide
      Cofactor: Fe(2+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     translation   1 term 
  Biochemical function     hydrolase activity     4 terms