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PDBsum entry 1k39

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protein ligands Protein-protein interface(s) links
Isomerase PDB id
1k39
Jmol
Contents
Protein chains
269 a.a. *
Ligands
PO4 ×3
CO8 ×3
Waters ×2
* Residue conservation analysis
PDB id:
1k39
Name: Isomerase
Title: The structure of yeast delta3-delta2-enoyl-coa isomerase com with octanoyl-coa
Structure: D3,d2-enoyl coa isomerase eci1. Chain: a, b, c. Engineered: yes. Mutation: yes
Source: Saccharomyces cerevisiae. Baker's yeast. Organism_taxid: 4932. Gene: eci1. Expressed in: escherichia coli. Expression_system_taxid: 562.
Biol. unit: Hexamer (from PDB file)
Resolution:
3.29Å     R-factor:   0.208     R-free:   0.262
Authors: A.M.Mursula,A.Geerlof,J.K.Hiltunen,R.K.Wierenga
Date:
02-Oct-01     Release date:   05-Aug-03    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q05871  (ECI1_YEAST) -  3,2-trans-enoyl-CoA isomerase
Seq:
Struc:
280 a.a.
269 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.5.3.3.8  - Dodecenoyl-CoA isomerase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: (3Z)-dodec-3-enoyl-CoA = (2E)-dodec-2-enoyl-CoA
(3Z)-dodec-3-enoyl-CoA
Bound ligand (Het Group name = CO8)
matches with 93.44% similarity
= (2E)-dodec-2-enoyl-CoA
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Cellular component     peroxisome   1 term 
  Biological process     metabolic process   4 terms 
  Biochemical function     catalytic activity     3 terms