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EBI
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Ligand clusters for UniProt code Q9UXC0
Ligand clusters for Q9UXC0: Exosome complex component Rrp42 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
4 ligand clusters
Cluster 1.
3 ligand types
5 ligands
Cluster 2.
2 ligand types
7 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
2 ligands
Representative protein: 2je6A
Structures
PDB
Schematic diagram
2je6
A
2c38
A
2c37
A
2jeb
A
4ba1
A
more ...
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
U5P × 3
Uridine-5'-Monophosphate
PDB codes:
2c37
(A),
2. Ligand:
AMP-AMP-AMP-AMP × 1
AMP
=Adenosine monophosphate.
PDB code:
2c38
(A).
3. Ligand:
PO4 × 1
Phosphate ion
PDB code:
4ba1
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
1PE × 5
Pentaethylene glycol
PDB codes:
2je6
(A),
2jea
(A),
2jeb
(A),
4ba1
(A),
4ba2
(A).
2. Ligand:
PEG × 2
Di(hydroxyethyl)ether
PDB codes:
2je6
(A),
4ba1
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
_Mn
1. Metal:
_MN × 1
PDB code:
2jeb
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 2
PDB codes:
4ba1
(A),
4ba2
(A).