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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code Q9UBE0
Ligand clusters for Q9UBE0: SUMO-activating enzyme subunit 1 from Homo sapiens
6 ligand clusters
Cluster 1.
2 ligand types
5 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1y8rA
Structures
PDB
Schematic diagram
1y8r
A
1y8q
A
6xoi
A
6cwy
C
6xog
A
more ...
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
SO4 × 3
Sulfate ion
PDB codes:
6xog
(A),
6xoh
(A),
6xoi
(A).
2. Ligand:
ATP × 2
Adenosine-5'-Triphosphate
PDB codes:
1y8q
(A),
1y8r
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
FHJ × 1
Dimethyl (1s,2s,3r,4r)-1-[(1s)-2-(4-Methylphenyl)-1- (Phenylamino)ethyl]-7-Oxabicyclo[2.2.1]hept-5-
Ene-2,3- Dicarboxylate
PDB code:
6cwy
(C).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
6cwy
(C).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
6cwy
(C).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3kyd
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3kyd
(A).