Ligand clusters for UniProt code Q9NZQ7

Ligand clusters for Q9NZQ7: Programmed cell death 1 ligand 1 from Homo sapiens

		4 ligand clusters Cluster 1. 15 ligand types 16 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 2 ligands Cluster 4. 1 ligand type 1 ligand
Representative protein: 4z18A

Structures

PDB		Schematic diagram
4z18A
6nm8A
5n2dA
6vqnA
5j8oA
		more ...

Cluster 1 contains 15 ligand types

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Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 5jds(A), 6np9(A).
		2. Ligand: 22L × 1 5-Phenylthieno[2,3-D]pyrimidin-4(3h)-One PDB code: 6nm7(A).
		3. Ligand: 6GX × 1 N-{2-[({2-Methoxy-6-[(2-Methyl[1,1'-Biphenyl]-3-Yl) methoxy]pyridin-3- Yl}methyl)amino]ethyl}acetamide PDB code: 5j89(C).
		4. Ligand: 6GZ × 1 (2r)-1-({3-Bromo-4-[(2-Methyl[1,1'-Biphenyl]-3-Yl) methoxy]phenyl}methyl)piperidine-2- Carboxylic acid PDB code: 5j8o(A).
		5. Ligand: 8HW × 1 4-[[4-[[3-(2,3-Dihydro-1,4-Benzodioxin-6-Yl)-2-Methyl- Phenyl]methoxy]-2,5- Bis(fluoranyl)phenyl]methylamino]- 3-Oxidanylidene-Butanoic acid PDB code: 5n2f(A).
		6. Ligand: 8J8 × 1 ~{N}-[2-[[2,6-Dimethoxy-4-[(2-Methyl-3-Phenyl-Phenyl) methoxy]phenyl]methylamino]ethyl]ethanamide PDB code: 5n2d(A).
		7. Ligand: 8YQ × 1 (2~{r},3~{r},5~{r})-2-[[2-[[3-(Aminomethyl) phenyl]methoxy]-4-[[3-(1,4-Benzodioxin-6-Yl)-2-Methyl- Phenyl]methoxy]-5-Chloranyl-Phenyl]methyl]-5-Oxidanyl- Pyrrolidine-3-Carboxylic acid PDB code: 5nix(A).
		8. Ligand: 8YZ × 1 (2~{r})-2-[[2-[(3-Cyanophenyl)methoxy]-4-[[3-(2,3- Dihydro-1,4-Benzodioxin-6-Yl)-2-Methyl- Phenyl]methoxy]-5-Methyl-Phenyl]methylamino]-3- Oxidanyl-Propanoic acid PDB code: 5niu(A).
		9. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5niu(A).
		10. Ligand: JQT × 1 (2~{s},4~{r})-1-[[5-Chloranyl-2-[(3-Cyanophenyl) methoxy]-4-[[3-(2,3-Dihydro-1,4-Benzodioxin-6-Yl)- 2- Methyl-Phenyl]methoxy]phenyl]methyl]-4-Oxidanyl- Pyrrolidine-2-Carboxylic acid PDB code: 6r3k(A).
		11. Ligand: KDW × 1 ~{N}-[2-[[4-[[3-[3-[[4-[(2-Acetamidoethylamino)methyl]- 5-[(5-Cyanopyridin-3-Yl)methoxy]-2-Methyl- Phenoxy]methyl]-2-Methyl-Phenyl]-2-Methyl- Phenyl]methoxy]-2-[(5-Cyanopyridin-3-Yl)methoxy]-5- Methyl-Phenyl]methylamino]ethyl]ethanamide PDB code: 6rpg(A).
		12. Ligand: KSD × 1 N-({2,6-Dimethoxy-4-[(2-Methyl[1,1'-Biphenyl]-3-Yl) methoxy]phenyl}methyl)-D-Alanine PDB code: 6nm8(A).
		13. Ligand: KW7 × 1 Methyl 3-Amino-4-(2-Fluorophenyl)-1h-Pyrrole-2- Carboxylate PDB code: 6noj(A).
		14. Ligand: KWA × 1 1-[5-(3,5-Dichlorophenyl)furan-2-Yl]-N- Methylmethanamine PDB code: 6nos(A).
		15. Ligand: R81 × 1 N,N'-(2,2'-Dimethyl[1,1'-Biphenyl]-3,3'-Diyl)bis(5- {[(2-Hydroxyethyl)amino]methyl}pyridine-2- Carboxamide) PDB code: 6vqn(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 6np9(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 5nix(A), 6r3k(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
_Cl		1. Metal: _CL × 1 PDB code: 4z18(A).