Ligand clusters for UniProt code Q99MB1

Ligand clusters for Q99MB1: Toll-like receptor 3 from Mus musculus

		Top 6 (of 14) ligand clusters Cluster 1. 3 ligand types 3 ligands Cluster 2. 3 ligand types 3 ligands Cluster 3. 4 ligand types 4 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 2 ligand types 3 ligands
Representative protein: 7c77A

Structures

PDB		Schematic diagram
7c77A
3ciyA
3cigA

Cluster 1 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG-NAG-BMA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB code: 7c77(A).
		2. Ligand: NAG-NAG-MAN-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 3ciy(A).
		3. Ligand: NAG-NDG-MAN-BMA-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose, MAN=Alpha-D-Mannopyranose, BMA=Beta-D-Mannopyranose. PDB code: 3cig(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 7c77(A).
		2. Ligand: NAG-NDG-BMA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB code: 3ciy(A).
		3. Ligand: NAG-NDG-BMA-FUL × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose, FUL=Beta-L-Fucopyranose, BMA=Beta-D-Mannopyranose. PDB code: 3cig(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 7c77(A).
		2. Ligand: FUC × 1 Alpha-L-Fucopyranose PDB code: 3cig(A).
		3. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 3cig(A).
		4. Ligand: NAG-NAG-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 3ciy(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG-NAG-FUL × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUL=Beta-L-Fucopyranose. PDB code: 3cig(A).
		2. Ligand: NAG-NAG-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 3ciy(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG-NDG × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose. PDB codes: 3cig(A), 3ciy(A).
		2. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 7c77(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 7c77(A).
		2. Ligand: NAG-NDG × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose. PDB codes: 3cig(A), 3ciy(A).