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EBI
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PDBsum
Ligand clusters for UniProt code Q94AG2
Ligand clusters for Q94AG2: Somatic embryogenesis receptor kinase 1 from Arabidopsis thaliana
Top 6 (of 8) ligand clusters
Cluster 1.
4 ligand types
8 ligands
Cluster 2.
2 ligand types
4 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6fg8A
Structures
PDB
Schematic diagram
6fg8
A
5iyx
C
4z64
C
4lsx
C
4lsc
A
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
NAG × 5
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes:
4lsc
(A),
4lsx
(C),
4z64
(C),
5iyx
(C).
2. Ligand:
NAG-NAG × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code:
6fg8
(A).
3. Ligand:
NAG-NAG-BMA × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose.
PDB code:
6fg8
(A).
4. Ligand:
NAG-NAG-BMA-FUC × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose,
FUC
=Alpha-L-Fucopyranose.
PDB code:
4lsc
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
NAG × 2
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes:
4lsc
(A),
5iyx
(C).
2. Ligand:
NAG-NAG × 2
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes:
6fg8
(A),
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
BLD × 1
Brassinolide
PDB code:
4lsx
(C).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
NAG-NAG × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code:
5iyx
(C).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
NAG-NAG × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code:
6fg8
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
1PE × 1
Pentaethylene glycol
PDB code:
6fg8
(A).