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Ligand clusters for UniProt code Q8U051
Ligand clusters for Q8U051: Signal recognition particle receptor FtsY from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
6 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
3 ligand types
3 ligands
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3dmdB
Structures
PDB
Schematic diagram
3dmd
B
3e70
C
3dm9
B
Cluster 1 contains 4 ligand types
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Ligand
Description
_Mg
1. Metal:
_MG × 1
PDB code:
3e70
(C).
2. Ligand:
GDP × 1
Guanosine-5'-Diphosphate
PDB code:
3e70
(C).
3. Ligand:
PO4 × 1
Phosphate ion
PDB code:
3dm9
(B).
4. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3dmd
(B).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
GDP × 1
Guanosine-5'-Diphosphate
PDB code:
3e70
(C).
Cluster 3 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3dmd
(B).
2. Ligand:
PO4 × 1
Phosphate ion
PDB code:
3dm9
(B).
3. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3dmd
(B).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
MPD × 1
(4s)-2-Methyl-2,4-Pentanediol
PDB code:
3dm9
(B).
2. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3dmd
(B).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
3dm9
(B).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
3dm9
(B).