Ligand clusters for UniProt code Q5F4T5

Ligand clusters for Q5F4T5: Capsid protein from Norwalk virus

		Top 6 (of 28) ligand clusters Cluster 1. 18 ligand types 98 ligands Cluster 2. 3 ligand types 16 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 2 ligand types 46 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 2 ligand types 2 ligands
Representative protein: 3onuA

Structures

PDB		Schematic diagram
3onuA
6gy9A
6gy9B
4z4yA
3q6rA
		more ...

Cluster 1 contains 18 ligand types

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Ligand		Description
		1. Ligand: EDO × 55 1,2-Ethanediol PDB codes: 3onu(A), 3pa1(A), 3pa2(A), 3q38(A), 3q39(A), 3q3a(A), 3q6q(A), 3q6r(A), 3ry8(A), 4x7f(A), 4z4r(A), 4z4s(A), 4z4t(A), 4z4u(A), 4z4v(A), 4z4w(A), 4z4y(A), 4z4z(A), 5bsx(A), 5bsy(A), 5hza(A), 5hzb(A), 5o03(A), 5o04(A), 5o05(A), 5omm(A), 6gw2(A), 6gy9(A),
		2. Ligand: FUL × 12 Beta-L-Fucopyranose PDB codes: 4z4r(A), 4z4s(A), 4z4t(A), 4z4u(A), 4z4v(A), 4z4w(A).
		3. Ligand: IMD × 8 Imidazole PDB codes: 3pa1(A), 3q38(A), 3q39(A), 3q3a(A), 3q6r(A).
		4. Ligand: FLC × 3 Citrate anion PDB codes: 3ry8(A), 5bsx(A), 5bsy(A).
		5. Ligand: GLA-FUC-GLA × 3 GLA=Alpha-D-Galactopyranose, FUC=Alpha-L-Fucopyranose. PDB codes: 4z4y(A), 4z4z(A),
		6. Ligand: NO3 × 3 Nitrate ion PDB codes: 4z4s(A), 4z4t(A), 4z4v(A).
		7. Ligand: FUC × 2 Alpha-L-Fucopyranose PDB codes: 3ony(A),
		8. Ligand: KBA × 2 2-(1h-1,2,3-Triazol-1-Yl)ethyl 6-Deoxy-Alpha-L- Galactopyranoside PDB codes: 6gy9(B),
		9. Ligand: BGC-FUC-GAL × 1 BGC=Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, GAL=Beta-D-Galactopyranose. PDB code: 5hza(A).
		10. Ligand: CHO × 1 Glycochenodeoxycholic acid PDB code: 6gw1(A).
		11. Ligand: GAL-FUC × 1 GAL=Beta-D-Galactopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 3q39(A).
		12. Ligand: GAL-FUC-A2G × 1 GAL=Beta-D-Galactopyranose, FUC=Alpha-L-Fucopyranose, A2G=2-Acetamido-2-Deoxy-Alpha-D-Galactopyranose. PDB code: 3pa1(A).
		13. Ligand: GAL-FUC-GLA × 1 GAL=Beta-D-Galactopyranose, FUC=Alpha-L-Fucopyranose, GLA=Alpha-D-Galactopyranose. PDB code: 3q38(A).
		14. Ligand: GLC-GAL-FUC × 1 GLC=Alpha-D-Glucopyranose, GAL=Beta-D-Galactopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 5hzb(A).
		15. Ligand: NAG-GAL-FUC-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 3pa2(A).
		16. Ligand: NAG-GAL-FUL × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, FUL=Beta-L-Fucopyranose. PDB code: 3q3a(A).
		17. Ligand: PO4 × 1 Phosphate ion PDB code: 4x7f(A).
		18. Ligand: TUD × 1 Taurochenodeoxycholic acid PDB code: 6gw2(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: EDO × 14 1,2-Ethanediol PDB codes: 3pa1(A), 3pa2(A), 3q38(A), 3q39(A), 3q3a(A), 3q6q(A), 3q6r(A), 4z4s(A), 4z4t(A), 4z4u(A), 4z4v(A), 5hza(A), 5o05(A), 5omm(A).
		2. Ligand: ACT × 1 Acetate ion PDB code: 4x7e(A).
		3. Ligand: IMD × 1 Imidazole PDB code: 4x7f(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: FUL × 1 Beta-L-Fucopyranose PDB code: 4z4u(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 40 1,2-Ethanediol PDB codes: 3onu(A), 3ony(A), 3pa1(A), 3pa2(A), 3q38(A), 3q39(A), 3q3a(A), 3q6q(A), 3q6r(A), 3ry8(A), 4x7e(A), 4x7f(A), 4z4s(A), 4z4t(A), 4z4v(A), 4z4y(A), 4z4z(A), 5hza(A), 5o03(A), 5o04(A), 5o05(A), 5omm(A), 6gw2(A), 6gy9(B).
		2. Ligand: IMD × 6 Imidazole PDB codes: 3pa2(A), 3q38(A), 3q39(A), 3q3a(A), 3q6q(A), 3q6r(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 4x7f(A), 5omm(A).
		2. Ligand: IMD × 1 Imidazole PDB code: 5o03(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5o05(A).
		2. Ligand: IMD × 1 Imidazole PDB code: 5o03(A).