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Ligand clusters for UniProt code Q59643

Ligand clusters for Q59643: Delta-aminolevulinic acid dehydratase from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

Top 6 (of 22) ligand clusters
Cluster 1.
7 ligand types
15 ligands
Cluster 2.
2 ligand types
4 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
2 ligand types
2 ligands
Cluster 6.
2 ligand types
3 ligands
Representative protein: 2c13A  
JSmol
 

Structures

PDB   Schematic diagram
2c13A    
2c14A    
1w56A    
1w5oA    
2c19A    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 7
PDB codes: 1w54(A), 1w56(A), 1w5m(A), 1w5n(A), 1w5o(A), 1w5p(A), 1w5q(A).

_Mg
 
2. Metal: _MG × 2
PDB codes: 2c18(A), 2woq(A).


 
3. Ligand: LAF × 2
5-Fluorolevulinic acid
PDB codes: 1gzg(A),


 
4. Ligand: SO4 × 1
Sulfate ion
PDB code: 1b4k(A).


 
5. Ligand: AYC × 1
Alaremycin 2
PDB code: 2woq(A).


 
6. Ligand: SHF × 1
Laevulinic acid
PDB code: 1b4k(A).

_Na
 
7. Metal: _NA × 1
PDB code: 1gzg(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: PE5 × 2
3,6,9,12,15,18,21,24-Octaoxahexacosan-1-Ol
PDB codes: 2woq(A),


 
2. Ligand: PGE × 2
Triethylene glycol
PDB codes: 2c16(A),

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: PE5 × 1
3,6,9,12,15,18,21,24-Octaoxahexacosan-1-Ol
PDB code: 2woq(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: PE5 × 1
3,6,9,12,15,18,21,24-Octaoxahexacosan-1-Ol
PDB code: 2woq(A).

 

 Cluster 5 contains 2 ligand types

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Ligand Description


 
1. Ligand: EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code: 2woq(A).

_Cl
 
2. Metal: _CL × 1
PDB code: 1w5m(A).

 

 Cluster 6 contains 2 ligand types

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Ligand Description

_Cl
 
1. Metal: _CL × 2
PDB codes: 1w5m(A), 2c13(A).


 
2. Ligand: EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code: 2woq(A).

 

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