Ligand clusters for UniProt code Q4G1L2

Ligand clusters for Q4G1L2: Variable lymphocyte receptor B from Eptatretus burgeri

		Top 6 (of 28) ligand clusters Cluster 1. 2 ligand types 3 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 3 ligand types 4 ligands Cluster 4. 4 ligand types 7 ligands Cluster 5. 3 ligand types 11 ligands Cluster 6. 3 ligand types 7 ligands
Representative protein: 5ijbA

Structures

PDB		Schematic diagram
5ijbA
5ijdA
5ijcA
2z63A
3v47A
		more ...

Cluster 1 contains 2 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: V2A × 2 Neoseptin 3 PDB codes: 5ijc(A),
		2. Ligand: LP4-LP5-DAO-MYR × 1 LP4=2-Deoxy-3-O-[(3r)-3-Hydroxytetradecanoyl]-2-{[(3r)-3- Hydroxytetradecanoyl]amino}-4-O-Phosphono- Beta-D- Glucopyranose, LP5=(R)-((2r,3s,4r,5r,6r)-3-Hydroxy-2-(Hydroxymethyl)-5- ((R)-3-Hydroxytetradecanamido)-6- (Phosphonooxy) tetrahydro-2h-Pyran-4-Yl) 3-Hydroxytetradecanoate, DAO=Lauric acid, MYR=Myristic acid. PDB code: 5ijd(A).

Cluster 2 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: LP4-LP5-DAO-MYR × 1 LP4=2-Deoxy-3-O-[(3r)-3-Hydroxytetradecanoyl]-2-{[(3r)-3- Hydroxytetradecanoyl]amino}-4-O-Phosphono- Beta-D- Glucopyranose, LP5=(R)-((2r,3s,4r,5r,6r)-3-Hydroxy-2-(Hydroxymethyl)-5- ((R)-3-Hydroxytetradecanamido)-6- (Phosphonooxy) tetrahydro-2h-Pyran-4-Yl) 3-Hydroxytetradecanoate, DAO=Lauric acid, MYR=Myristic acid. PDB code: 5ijd(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 4qdh(A).

Cluster 3 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 2 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 4qdh(A),
		2. Ligand: E55 × 1 3-O-Decyl-2-Deoxy-6-O-{2-Deoxy-3-O-[(3r)-3- Methoxydecyl]-6-O-Methyl-2-[(11z)-Octadec-11- Enoylamino]-4-O-Phosphono-Beta-D-Glucopyranosyl}-2- [(3-Oxotetradecanoyl)amino]-1-O-Phosphono- Alpha-D- Glucopyranose PDB code: 3ula(A).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 2z66(A).

Cluster 4 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 2 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 2z65(A), 3ula(A).
		2. Ligand: NAG-NAG-BMA × 3 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB codes: 3ul7(A), 3ul8(A), 3ul9(A).
		3. Ligand: FUL × 1 Beta-L-Fucopyranose PDB code: 3ul8(A).
		4. Ligand: NAG-NAG-FUL × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUL=Beta-L-Fucopyranose. PDB code: 2z62(A).

Cluster 5 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 4 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3v44(A), 5gy2(A), 5ijb(A), 6bxa(A).
		2. Ligand: NAG-NAG × 5 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 2z62(A), 2z66(A), 3v47(A), 5ijc(A), 5ijd(A).
		3. Ligand: NAG-NAG-BMA × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB codes: 2z65(A), 3ula(A).

Cluster 6 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 2 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 4qdh(A), 6bxc(A).
		2. Ligand: NAG-NAG × 4 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 2z66(A), 3v47(A), 5gy2(A), 6bxa(A).
		3. Ligand: NAG-NAG-BMA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB code: 2z66(A).