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EBI
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Ligand clusters for UniProt code Q2G506
Ligand clusters for Q2G506: ATM1-type heavy metal exporter from Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199)
Top 6 (of 12) ligand clusters
Cluster 1.
5 ligand types
11 ligands
Cluster 2.
5 ligand types
9 ligands
Cluster 3.
4 ligand types
6 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
10 ligands
Cluster 6.
1 ligand type
5 ligands
Representative protein: 4mrnA
Structures
PDB
Schematic diagram
4mrn
A
4mrs
A
4mrv
A
4mrp
A
4mrr
A
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Cluster 1 contains 5 ligand types
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Ligand
Description
1. Ligand:
PO4 × 5
Phosphate ion
PDB codes:
4mrn
(A),
4mrp
(A),
4mrr
(A),
4mrs
(A),
4mrv
(A).
2. Ligand:
ATP × 3
Adenosine-5'-Triphosphate
PDB codes:
6pan
(A),
6pao
(A),
6paq
(A).
3. Ligand:
ADP × 1
Adenosine-5'-Diphosphate
PDB code:
6pam
(A).
4. Ligand:
ADP-VO4 × 1
ADP
=Adenosine-5'-Diphosphate,
VO4
=Vanadate ion.
PDB code:
6vqt
(A).
5. Ligand:
ANP × 1
Phosphoaminophosphonic acid-Adenylate ester
PDB code:
6par
(A).
Cluster 2 contains 5 ligand types
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Ligand
Description
1. Ligand:
GDS × 2
glutathione disulfide
Oxidized glutathione disulfide
PDB codes:
4mrs
(A),
2. Ligand:
GSH × 2
glutathione
Glutathione
PDB codes:
4mrp
(A),
3. Ligand:
MSE × 1
selenomethionine
Selenomethionine
PDB code:
4mrr
(A).
4. Ligand:
PO4 × 3
Phosphate ion
PDB codes:
4mrn
(A),
4mrr
(A),
4mrv
(A).
5. Ligand:
HGD × 1
Mercury bis(l-Gamma-Glutamyl-3-Sulfido-L-Alanylglycine)
PDB code:
4mrv
(A).
Cluster 3 contains 4 ligand types
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Ligand
Description
1. Ligand:
ATP × 3
Adenosine-5'-Triphosphate
PDB codes:
6pan
(A),
6pao
(A),
6paq
(A).
2. Ligand:
ADP × 1
Adenosine-5'-Diphosphate
PDB code:
6vqt
(A).
3. Ligand:
ANP × 1
Phosphoaminophosphonic acid-Adenylate ester
PDB code:
6par
(A).
4. Ligand:
VO4 × 1
Vanadate ion
PDB code:
6vqt
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
ADP × 1
Adenosine-5'-Diphosphate
PDB code:
6pam
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
LDA × 10
Lauryl dimethylamine-N-Oxide
PDB codes:
4mrn
(A),
4mrp
(A),
4mrr
(A),
4mrs
(A),
4mrv
(A),
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
LDA × 5
Lauryl dimethylamine-N-Oxide
PDB codes:
4mrn
(A),
4mrp
(A),
4mrr
(A),
4mrs
(A),
4mrv
(A).