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Ligand clusters for UniProt code Q2G506

Ligand clusters for Q2G506: ATM1-type heavy metal exporter from Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199)

Top 6 (of 12) ligand clusters
Cluster 1.
5 ligand types
11 ligands
Cluster 2.
5 ligand types
9 ligands
Cluster 3.
4 ligand types
6 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
10 ligands
Cluster 6.
1 ligand type
5 ligands
Representative protein: 4mrnA  
JSmol
 

Structures

PDB   Schematic diagram
4mrnA    
4mrsA    
4mrvA    
4mrpA    
4mrrA    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: PO4 × 5
Phosphate ion
PDB codes: 4mrn(A), 4mrp(A), 4mrr(A), 4mrs(A), 4mrv(A).


 
2. Ligand: ATP × 3
Adenosine-5'-Triphosphate
PDB codes: 6pan(A), 6pao(A), 6paq(A).


 
3. Ligand: ADP × 1
Adenosine-5'-Diphosphate
PDB code: 6pam(A).


 
4. Ligand: ADP-VO4 × 1
ADP=Adenosine-5'-Diphosphate, VO4=Vanadate ion.
PDB code: 6vqt(A).


 
5. Ligand: ANP × 1
Phosphoaminophosphonic acid-Adenylate ester
PDB code: 6par(A).

 

 Cluster 2 contains 5 ligand types

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Ligand Description


 
1. Ligand: GDS × 2
glutathione disulfide
Oxidized glutathione disulfide
PDB codes: 4mrs(A),


 
2. Ligand: GSH × 2
glutathione
Glutathione
PDB codes: 4mrp(A),


 
3. Ligand: MSE × 1
selenomethionine
Selenomethionine
PDB code: 4mrr(A).


 
4. Ligand: PO4 × 3
Phosphate ion
PDB codes: 4mrn(A), 4mrr(A), 4mrv(A).


 
5. Ligand: HGD × 1
Mercury bis(l-Gamma-Glutamyl-3-Sulfido-L-Alanylglycine)
PDB code: 4mrv(A).

 

 Cluster 3 contains 4 ligand types

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Ligand Description


 
1. Ligand: ATP × 3
Adenosine-5'-Triphosphate
PDB codes: 6pan(A), 6pao(A), 6paq(A).


 
2. Ligand: ADP × 1
Adenosine-5'-Diphosphate
PDB code: 6vqt(A).


 
3. Ligand: ANP × 1
Phosphoaminophosphonic acid-Adenylate ester
PDB code: 6par(A).


 
4. Ligand: VO4 × 1
Vanadate ion
PDB code: 6vqt(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: ADP × 1
Adenosine-5'-Diphosphate
PDB code: 6pam(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: LDA × 10
Lauryl dimethylamine-N-Oxide
PDB codes: 4mrn(A), 4mrp(A), 4mrr(A), 4mrs(A), 4mrv(A),

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: LDA × 5
Lauryl dimethylamine-N-Oxide
PDB codes: 4mrn(A), 4mrp(A), 4mrr(A), 4mrs(A), 4mrv(A).

 

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