spacer
spacer
EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code Q00959

Ligand clusters for Q00959: Glutamate receptor ionotropic, NMDA 2A from Rattus norvegicus

Top 6 (of 16) ligand clusters
Cluster 1.
19 ligand types
82 ligands
 Cluster 2.
4 ligand types
4 ligands
 Cluster 3.
2 ligand types
18 ligands
 Cluster 4.
2 ligand types
18 ligands
 Cluster 5.
1 ligand type
18 ligands
 Cluster 6.
1 ligand type
1 ligand
Representative protein: 6mmaB  
JSmol
 

Structures

PDB   Schematic diagram
6mmaB    
6mm9B    
6mmtB    
6mmxB    
6mmlB    
 more ...

 

 Cluster 1 contains 19 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 42
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 6mm9(B), 6mma(B), 6mmg(B), 6mmh(B), 6mmi(B), 6mmk(B), 6mml(B), 6mmm(B), 6mmn(B), 6mmp(B), 6mmr(B), 6mms(B), 6mmt(B), 6mmu(B), 6mmv(B), 6mmw(B), 6mmx(B),


 
2. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 4nf5(B), 6usv(B).


 
3. Ligand: TRS × 2
tromethamine
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB codes: 5ddx(B), 5vii(B).


 
4. Ligand: GLU × 11
PDB codes: 2a5s(A), 2a5t(B), 4nf4(B), 4nf8(B), 5i56(B), 5i57(B), 5i58(B), 5i59(B), 5jty(B), 6usu(B), 6uz6(B).


 
5. Ligand: NAG-NAG × 6
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 6mmg(B), 6mmi(B), 6mmm(B), 6mmn(B), 6mmp(B), 6mmv(B).


 
6. Ligand: 5DX × 2
5-[(2r)-2-Amino-2-Carboxyethyl]-1-(4-Bromophenyl)-1h- Pyrazole-3-Carboxylic acid
PDB codes: 5ddn(B), 5vij(B).


 
7. Ligand: 5DY × 2
5-[(2r)-2-Amino-2-Carboxyethyl]-1-[4-(3-Fluoropropyl) phenyl]-1h-Pyrazole-3-Carboxylic acid
PDB codes: 5ddx(B), 5vii(B).


 
8. Ligand: 5DZ × 2
5-[(2r)-2-Amino-2-Carboxyethyl]-1-(4-Fluorophenyl)-1h- Pyrazole-3-Carboxylic acid
PDB codes: 5de4(B), 5vih(B).


 
9. Ligand: QM1 × 2
3-(Carboxymethyl)pyridine-2-Carboxylic acid
PDB codes: 6uzg(B), 6uzr(B).


 
10. Ligand: QM4 × 2
(2s,3r)-1-[7-(2-Carboxyethyl)phenanthrene-2- Carbonyl]piperazine-2,3-Dicarboxylic acid
PDB codes: 6uzw(B), 6uzx(B).


 
11. Ligand: 1N4 × 1
(2r)-Amino(1-Hydroxy-4-Propyl-1h-Pyrazol-5-Yl)ethanoic acid
PDB code: 4jwx(A).


 
12. Ligand: 2JJ × 1
5-Phosphono-D-Norvaline
PDB code: 4nf5(B).


 
13. Ligand: 2JL × 1
(2s,3r)-1-(Phenanthren-2-Ylcarbonyl)piperazine-2,3- Dicarboxylic acid
PDB code: 4nf6(B).


 
14. Ligand: 5E0 × 1
5-[(2r)-2-Amino-2-Carboxyethyl]-1-Phenyl-1h-Pyrazole-3- Carboxylic acid
PDB code: 5dex(B).


 
15. Ligand: 84J × 1
[(R)-{[(1s)-1-(4-Bromophenyl)ethyl]amino}(2,3- Dihydroxyquinoxalin-5-Yl)methyl]phosphonic acid
PDB code: 5u8c(B).


 
16. Ligand: M7V × 1
(1s,2r)-2-[(S)-Amino(carboxy)methyl]-1- Butylcyclopropane-1-Carboxylic acid
PDB code: 6odl(A).


 
17. Ligand: N9A × 1
(3s,5s)-5-[(2r)-2-Amino-2-Carboxyethyl]-1-(3- Ethylphenyl)pyrazolidine-3-Carboxylic acid
PDB code: 6ovd(B).


 
18. Ligand: N9D × 1
(3r,5s)-5-[(2r)-2-Amino-2-Carboxyethyl]-1-(4- Propylphenyl)pyrazolidine-3-Carboxylic acid
PDB code: 6ove(B).


 
19. Ligand: QGP × 1
(2s)-2-Amino-3-[2',4'-Dichloro-4-Hydroxy-5- (Phosphonomethyl)biphenyl-3-Yl]propanoic acid
PDB code: 6usv(B).

 

 Cluster 2 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: 67P × 1
N-({4-[2-(Benzenecarbonyl) hydrazinecarbonyl]phenyl}methyl)-3-Chloro-4- Fluorobenzene-1-
Sulfonamide
PDB code: 5i56(B).


 
2. Ligand: 67Q × 1
5-({[(3,4-Difluorophenyl)sulfonyl]amino}methyl)-6- Methyl-N-[(2-Methyl-4h-1lambda~4~,3-Thiazol-5-
Yl) methyl]pyrazine-2-Carboxamide
PDB code: 5i59(B).


 
3. Ligand: 67R × 1
5-({[(3-Chloro-4-Fluorophenyl)sulfonyl]amino}methyl)-N- [(2-Methyl-1,3-Thiazol-5-
Yl)methyl]pyrazine-2- Carboxamide
PDB code: 5i58(B).


 
4. Ligand: 6ND × 1
5-({[(3,4-Difluorophenyl)sulfonyl]amino}methyl)-6- Methyl-N-[(2-Methyl-1,3-Thiazol-5-
Yl)methyl]pyrazine- 2-Carboxamide
PDB code: 5jty(B).

 

 Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 17
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 6mm9(B), 6mma(B), 6mmb(B), 6mmg(B), 6mmh(B), 6mmi(B), 6mmk(B), 6mml(B), 6mmm(B), 6mmp(B), 6mmr(B), 6mms(B), 6mmt(B), 6mmu(B), 6mmv(B), 6mmw(B), 6mmx(B).


 
2. Ligand: NAG-NAG × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code: 6mmn(B).

 

 Cluster 4 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 17
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 6mm9(B), 6mma(B), 6mmb(B), 6mmg(B), 6mmh(B), 6mmi(B), 6mmk(B), 6mml(B), 6mmm(B), 6mmn(B), 6mmp(B), 6mmr(B), 6mms(B), 6mmt(B), 6mmu(B), 6mmv(B), 6mmw(B).


 
2. Ligand: NAG-NAG × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code: 6mmx(B).

 

 Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 18
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 6mm9(B), 6mma(B), 6mmb(B), 6mmg(B), 6mmh(B), 6mmi(B), 6mmk(B), 6mml(B), 6mmm(B), 6mmn(B), 6mmp(B), 6mmr(B), 6mms(B), 6mmt(B), 6mmu(B), 6mmv(B), 6mmw(B), 6mmx(B).

 

 Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code: 6mmb(B).

 

spacer
spacer