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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code Q000H7

Ligand clusters for Q000H7: Protease (Fragment) from Human immunodeficiency virus 1

1 ligand cluster
Cluster 1.
8 ligand types
10 ligands
Representative protein: 3r0wA  
JSmol
 

Structures

PDB   Schematic diagram
3r0wA    
4l1aA    
4l1aB    
3spkA    
4fafA    
 more ...

 

 Cluster 1 contains 8 ligand types

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Ligand Description


 
1. Ligand: AB1 × 2
lopinavir
N-{1-Benzyl-4-[2-(2,6-Dimethyl-Phenoxy)-Acetylamino]-3- Hydroxy-5-Phenyl-Pentyl}-3-Methyl-2-(2-Oxo-
Tetrahydro- Pyrimidin-1-Yl)-Butyramide
PDB codes: 4l1a(A),


 
2. Ligand: TPV × 2
tipranavir
N-(3-{(1r)-1-[(6r)-4-Hydroxy-2-Oxo-6-Phenethyl-6- Propyl-5,6-Dihydro-2h-Pyran-3-Yl]propyl}phenyl)-
5- (Trifluoromethyl)-2-Pyridinesulfonamide
PDB codes: 3spk(A),


 
3. Ligand: 017 × 1
darunavir
(3r,3as,6ar)-Hexahydrofuro[2,3-B]furan-3-Yl(1s,2r)-3- [[(4-Aminophenyl)sulfonyl](isobutyl)amino]-1-
Benzyl-2- Hydroxypropylcarbamate
PDB code: 3so9(A).


 
4. Ligand: RIT × 1
ritonavir
Ritonavir
PDB code: 4eyr(A).


 
5. Ligand: ARG-VAL-LEU-PHE-GLU-ALA-MET × 1
PDB code: 4faf(A).


 
6. Ligand: RSY × 1
N-[(2r)-1-{[(2s,3s)-5-{[(2r)-1-{[(2s)-1-Amino-4-Methyl- 1-Oxopentan-2-Yl]amino}-3-Chloro-1-
Oxopropan-2- Yl]amino}-3-Hydroxy-5-Oxo-1-Phenylpentan-2-Yl]amino}- 3-Methyl-1-Oxobutan-2-
Yl]pyridine-2-Carboxamide
PDB code: 3r0w(A).


 
7. Ligand: RSZ × 1
N-[(2s)-1-{[(2s,3s)-3-Hydroxy-5-Oxo-5-{[(2r)-1-Oxo-3- Phenyl-1-(Prop-2-Yn-1-Ylamino)propan-2-
Yl]amino}-1- Phenylpentan-2-Yl]amino}-3-Methyl-1-Oxobutan-2- Yl]pyridine-2-Carboxamide
PDB code: 3r0y(A).


 
8. Ligand: THR-ILE-MET-MET-GLN-ARG-GLY × 1
PDB code: 4fae(A).

 

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