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Ligand clusters for UniProt code P97571

Ligand clusters for P97571: Calpain-1 catalytic subunit from Rattus norvegicus

Top 6 (of 8) ligand clusters
Cluster 1.
9 ligand types
9 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
9 ligands
Cluster 5.
1 ligand type
9 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 2g8eA  
JSmol
 

Structures

PDB   Schematic diagram
2g8eA    
2nqiA    
2r9cA    
2g8jA    
1kxrA    
 more ...

 

 Cluster 1 contains 9 ligand types

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Ligand Description


 
1. Ligand: 0M6 × 1
N-[(2s)-1,4-Dihydroxybutan-2-Yl]-N~2~- (Phenylcarbamothioyl)-L-Leucinamide
PDB code: 2g8e(A).


 
2. Ligand: ACE-LEU-LEU-AR7 × 1
ACE=Acetyl group, AR7=Amino{[(4s)-4-Amino-5,5- Dihydroxypentyl]amino}methaniminium.
PDB code: 1tl9(A).


 
3. Ligand: D7G × 1
((1s)-1-((((1s)-1-Benzyl-3-(Cyclopropylamino)-2,3- Dioxopropyl)amino)carbonyl)-3-
Methylbutyl)carbamic acid 5-Methoxy-3-Oxapentyl ester
PDB code: 2g8j(A).


 
4. Ligand: E64 × 1
N-[N-[1-Hydroxycarboxyethyl-Carbonyl]leucylamino- Butyl]-Guanidine
PDB code: 1tlo(A).


 
5. Ligand: GRD × 1
Benzyl (s)-1-((2s,3s)-1-(3-(6-Amino-9h-Purin-9-Yl) propylamino)-2-Hydroxy-1-Oxopentan-3-Ylamino)-4-
Methyl-1-Oxopentan-2-Ylcarbamate
PDB code: 2r9c(A).


 
6. Ligand: K2Z × 1
Benzyl [(1s)-1-{[(1s,2s)-1-Ethyl-2-Hydroxy-3-{[3-(4- Methylpiperazin-1-Yl)propyl]amino}-3-
Oxopropyl]carbamoyl}-3-Methylbutyl]carbamate
PDB code: 2r9f(A).


 
7. Ligand: MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code: 2g8e(A).


 
8. Ligand: NQG × 1
5-Azanylidyne-N-[(2s)-4-Ethoxy-2-Hydroxy-4- Oxobutanoyl]-L-Norvalyl-L-Arginyl-L-Tryptophanamide
PDB code: 2nqg(A).


 
9. Ligand: NQI × 1
N~2~-[(2s)-2-{[(2r)-4-Ethoxy-2-Hydroxy-4- Oxobutanoyl]amino}pent-4-Enoyl]-L-Arginyl-L-
Tryptophanamide
PDB code: 2nqi(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 2r9c(A), 2r9f(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 2r9c(A), 2r9f(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description

_Ca
 
1. Metal: _CA × 9
PDB codes: 1kxr(A), 1tl9(A), 1tlo(A), 2g8e(A), 2g8j(A), 2nqg(A), 2nqi(A), 2r9c(A), 2r9f(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Ca
 
1. Metal: _CA × 9
PDB codes: 1kxr(A), 1tl9(A), 1tlo(A), 2g8e(A), 2g8j(A), 2nqg(A), 2nqi(A), 2r9c(A), 2r9f(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Cl
 
1. Metal: _CL × 2
PDB codes: 2r9c(A), 2r9f(A).

 

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