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Ligand clusters for UniProt code P97571
Ligand clusters for P97571: Calpain-1 catalytic subunit from Rattus norvegicus
Top 6 (of 8) ligand clusters
Cluster 1.
9 ligand types
9 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
9 ligands
Cluster 5.
1 ligand type
9 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 2g8eA
Structures
PDB
Schematic diagram
2g8e
A
2nqi
A
2r9c
A
2g8j
A
1kxr
A
more ...
Cluster 1 contains 9 ligand types
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Ligand
Description
1. Ligand:
0M6 × 1
N-[(2s)-1,4-Dihydroxybutan-2-Yl]-N~2~- (Phenylcarbamothioyl)-L-Leucinamide
PDB code:
2g8e
(A).
2. Ligand:
ACE-LEU-LEU-AR7 × 1
ACE
=Acetyl group,
AR7
=Amino{[(4s)-4-Amino-5,5- Dihydroxypentyl]amino}methaniminium.
PDB code:
1tl9
(A).
3. Ligand:
D7G × 1
((1s)-1-((((1s)-1-Benzyl-3-(Cyclopropylamino)-2,3- Dioxopropyl)amino)carbonyl)-3-
Methylbutyl)carbamic acid 5-Methoxy-3-Oxapentyl ester
PDB code:
2g8j
(A).
4. Ligand:
E64 × 1
N-[N-[1-Hydroxycarboxyethyl-Carbonyl]leucylamino- Butyl]-Guanidine
PDB code:
1tlo
(A).
5. Ligand:
GRD × 1
Benzyl (s)-1-((2s,3s)-1-(3-(6-Amino-9h-Purin-9-Yl) propylamino)-2-Hydroxy-1-Oxopentan-3-Ylamino)-4-
Methyl-1-Oxopentan-2-Ylcarbamate
PDB code:
2r9c
(A).
6. Ligand:
K2Z × 1
Benzyl [(1s)-1-{[(1s,2s)-1-Ethyl-2-Hydroxy-3-{[3-(4- Methylpiperazin-1-Yl)propyl]amino}-3-
Oxopropyl]carbamoyl}-3-Methylbutyl]carbamate
PDB code:
2r9f
(A).
7. Ligand:
MES × 1
2-(N-Morpholino)-Ethanesulfonic acid
PDB code:
2g8e
(A).
8. Ligand:
NQG × 1
5-Azanylidyne-N-[(2s)-4-Ethoxy-2-Hydroxy-4- Oxobutanoyl]-L-Norvalyl-L-Arginyl-L-Tryptophanamide
PDB code:
2nqg
(A).
9. Ligand:
NQI × 1
N~2~-[(2s)-2-{[(2r)-4-Ethoxy-2-Hydroxy-4- Oxobutanoyl]amino}pent-4-Enoyl]-L-Arginyl-L-
Tryptophanamide
PDB code:
2nqi
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
2r9c
(A),
2r9f
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
2r9c
(A),
2r9f
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
_Ca
1. Metal:
_CA × 9
PDB codes:
1kxr
(A),
1tl9
(A),
1tlo
(A),
2g8e
(A),
2g8j
(A),
2nqg
(A),
2nqi
(A),
2r9c
(A),
2r9f
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Ca
1. Metal:
_CA × 9
PDB codes:
1kxr
(A),
1tl9
(A),
1tlo
(A),
2g8e
(A),
2g8j
(A),
2nqg
(A),
2nqi
(A),
2r9c
(A),
2r9f
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 2
PDB codes:
2r9c
(A),
2r9f
(A).