Ligand clusters for UniProt code P62993

Ligand clusters for P62993: Growth factor receptor-bound protein 2 from Homo sapiens

		Top 6 (of 21) ligand clusters Cluster 1. 41 ligand types 55 ligands Cluster 2. 4 ligand types 5 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 3 ligand types 5 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 2 ligands
Representative protein: 3n84A

Structures

PDB		Schematic diagram
3n84A
3imdA
3n7yA
3n84D
1jyrA
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Cluster 1 contains 41 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 2h46(E), 3n8m(A), 3ov1(A), 3s8n(A).
		2. Ligand: IPA × 1 isopropyl alcohol Isopropyl alcohol PDB code: 6wo2(A).
		3. Ligand: S1S × 4 2-(4-((9s,10s,14s,Z)-18-(2-Amino-2-Oxoethyl)-9- (Carboxymethyl)-14-(Naphthalen-1-Ylmethyl)-8,17,20- Trioxo-7,16,19-Triazaspiro[5.14]icos-11-En-10-Yl) phenyl)malonic acid PDB codes: 2aoa(A), 2aob(A).
_Cl		4. Metal: _CL × 4 PDB codes: 3imd(A), 3kfj(A), 3n84(A),
		5. Ligand: PTR-VAL-ASN-VAL-PRO-011 × 3 PTR=O-Phosphotyrosine, 011=7-Aminoheptanoic acid. PDB codes: 3n84(A),
		6. Ligand: ACT × 2 Acetate ion PDB codes: 4p9z(A),
		7. Ligand: SO4 × 2 Sulfate ion PDB codes: 6icg(A),
		8. Ligand: 6NA-PTR-VAL-ASN-VAL-9PR × 1 6NA=Hexanoic acid, PTR=O-Phosphotyrosine, 9PR=N-Methyl-L-Prolinamide. PDB code: 3n8m(A).
		9. Ligand: ACE-PTR-02K-ASN-NH2 × 1 ACE=Acetyl group, PTR=O-Phosphotyrosine, 02K=1-Aminocyclohexanecarboxylic acid, NH2=Amino group. PDB code: 3s8o(A).
		10. Ligand: ACE-PTR-02K-ASN-PRA × 1 ACE=Acetyl group, PTR=O-Phosphotyrosine, 02K=1-Aminocyclohexanecarboxylic acid, PRA=3-Phenylpropylamine. PDB code: 6wm1(A).
		11. Ligand: ACE-PTR-02K-ASN-U67 × 1 ACE=Acetyl group, PTR=O-Phosphotyrosine, 02K=1-Aminocyclohexanecarboxylic acid, U67=4-Methylpentan-1-Amine. PDB code: 6wo2(A).
		12. Ligand: ACE-PTR-192-ASN-NH2 × 1 ACE=Acetyl group, PTR=O-Phosphotyrosine, 192=1-Aminocyclobutanecarboxlic acid, NH2=Amino group. PDB code: 3s8l(A).
		13. Ligand: ACE-PTR-AC5-ASN-NH2 × 1 ACE=Acetyl group, PTR=O-Phosphotyrosine, AC5=1-Aminocyclopentanecarboxylic acid, NH2=Amino group. PDB code: 3s8n(A).
		14. Ligand: ACE-PTR-VAL-ASN-NH2 × 1 ACE=Acetyl group, PTR=O-Phosphotyrosine, NH2=Amino group. PDB code: 2h5k(A).
		15. Ligand: ACE-PTR-VAL-ASN-VAL × 1 ACE=Acetyl group, PTR=O-Phosphotyrosine. PDB code: 1fyr(A).
		16. Ligand: ACE-SLZ-PTR-VAL-ASN-VAL-PRO × 1 ACE=Acetyl group, SLZ=L-Thialysine, PTR=O-Phosphotyrosine. PDB code: 1bm2(A).
		17. Ligand: ACT-PTR-03E-ASN-NH2 × 1 ACT=Acetate ion, PTR=O-Phosphotyrosine, 03E=1-Aminocycloheptanecarboxylic acid, NH2=Amino group. PDB code: 3ove(A).
		18. Ligand: ACT-PTR-1AC-ASN-NH2 × 1 ACT=Acetate ion, PTR=O-Phosphotyrosine, 1AC=1-Aminocyclopropanecarboxylic acid, NH2=Amino group. PDB code: 3ov1(A).
		19. Ligand: ALA-PRO-SER-PTR-VAL-ASN-VAL-GLN-ASN × 1 PTR=O-Phosphotyrosine. PDB code: 1jyr(A).
		20. Ligand: ARG-HIS-TYR-ARG-PRO-LEU-PRO-PRO-LEU-PRO × 1 PDB code: 1io6(A).
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Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3n84(A).
		2. Ligand: S1S × 2 2-(4-((9s,10s,14s,Z)-18-(2-Amino-2-Oxoethyl)-9- (Carboxymethyl)-14-(Naphthalen-1-Ylmethyl)-8,17,20- Trioxo-7,16,19-Triazaspiro[5.14]icos-11-En-10-Yl) phenyl)malonic acid PDB codes: 2aob(A),
		3. Ligand: ALA-PRO-PRO-PRO-ARG-PRO-PRO-LYS-PRO × 1 PDB code: 2w0z(A).
		4. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 6sdf(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: VAL-PRO-PRO-PRO-VAL-PRO-PRO-ARG-ARG-ARG × 1 PDB code: 1aze(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4p9z(A).
		2. Ligand: S1S × 3 2-(4-((9s,10s,14s,Z)-18-(2-Amino-2-Oxoethyl)-9- (Carboxymethyl)-14-(Naphthalen-1-Ylmethyl)-8,17,20- Trioxo-7,16,19-Triazaspiro[5.14]icos-11-En-10-Yl) phenyl)malonic acid PDB codes: 2aoa(A), 2aob(A),
		3. Ligand: P33 × 1 3,6,9,12,15,18-Hexaoxaicosane-1,20-Diol PDB code: 2aoa(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: MRD × 1 (4r)-2-Methylpentane-2,4-Diol PDB code: 1gcq(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: MPD × 2 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 6sdf(A),