Ligand clusters for UniProt code P62837

Ligand clusters for P62837: Ubiquitin-conjugating enzyme E2 D2 from Homo sapiens

		Top 6 (of 11) ligand clusters Cluster 1. 4 ligand types 8 ligands Cluster 2. 3 ligand types 8 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 5ulfA

Structures

PDB		Schematic diagram
5ulfA
3a33A
2clwA
2espA
6w7zA
		more ...

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol; propane-1,2,3-Triol PDB codes: 2clw(A), 3a33(A), 5ulf(A), 5ulh(A), 6w7z(A).
		2. Ligand: CYS-LYS-LYS-GLU × 1 PDB code: 6ttu(D).
		3. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4v3l(A).
_Cl		4. Metal: _CL × 1 PDB code: 4v3k(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: OXL × 3 Oxalate ion PDB codes: 5d1k(A), 5d1l(A), 5d1m(A).
		2. Ligand: PEG × 3 Di(hydroxyethyl)ether PDB codes: 5d1k(A), 5d1l(A), 5d1m(A).
		3. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 4v3l(A), 5d1k(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 2esp(A).
		2. Ligand: PO4 × 1 Phosphate ion PDB code: 5d0m(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol; propane-1,2,3-Triol PDB code: 2clw(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4v3k(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: NO3 × 1 Nitrate ion PDB code: 6sqo(B).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 2clw(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5ulf(A).