Ligand clusters for UniProt code P62491

Ligand clusters for P62491: Ras-related protein Rab-11A from Homo sapiens

		Top 6 (of 15) ligand clusters Cluster 1. 8 ligand types 48 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 4uj3A

Structures

PDB		Schematic diagram
4uj3A
4uj4A
5euqB
5c4gB
2d7cA
		more ...

Cluster 1 contains 8 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 18 PDB codes: 1oiw(A), 1oix(A), 1yzk(A), 2d7c(A), 2gzd(A), 2gzh(A), 2hv8(A), 4c4p(A), 4d0l(B), 4d0m(B), 4lwz(A), 4lx0(A), 4uj3(A), 4uj4(A), 4uj5(A), 5ez5(A), 5jcz(A),
		2. Ligand: GSP × 8 5'-Guanosine-Diphosphate-Monothiophosphate PDB codes: 1oiw(A), 4d0l(B), 4d0m(B), 5c46(F), 5fbl(B), 5fbr(B), 5fbv(B), 5fbw(B).
		3. Ligand: GDP × 7 Guanosine-5'-Diphosphate PDB codes: 1oiv(A), 1oix(A), 4lwz(A), 5c4g(B), 5euq(B), 5fbq(B), 6iy1(A).
		4. Ligand: GNP × 5 Phosphoaminophosphonic acid-Guanylate ester PDB codes: 1yzk(A), 4c4p(A), 4uj3(A), 4uj4(A), 4uj5(A).
		5. Ligand: GTP × 5 Guanosine-5'-Triphosphate PDB codes: 2d7c(A), 2gzd(A), 2gzh(A), 2hv8(A), 5ez5(A).
		6. Ligand: GDP-BEF × 2 GDP=Guanosine-5'-Diphosphate, BEF=Beryllium trifluoride ion. PDB codes: 5jcz(A),
		7. Ligand: PO4 × 2 Phosphate ion PDB codes: 1oix(A), 6ixv(E).
		8. Ligand: BEF-GDP × 1 BEF=Beryllium trifluoride ion, GDP=Guanosine-5'-Diphosphate. PDB code: 4lx0(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 2d7c(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4lx0(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5jcz(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5jcz(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 2gzh(A).