Ligand clusters for UniProt code P56524

Ligand clusters for P56524: Histone deacetylase 4 from Homo sapiens

		Top 6 (of 11) ligand clusters Cluster 1. 7 ligand types 23 ligands Cluster 2. 2 ligand types 3 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 3 ligands Cluster 5. 1 ligand type 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 2vqjA

Structures

PDB		Schematic diagram
2vqjA
2vqmA
2vqoA
2vqvA
2vqqA
		more ...

Cluster 1 contains 7 ligand types

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Ligand		Description
_Zn		1. Metal: _ZN × 13 PDB codes: 2vqj(A), 2vqm(A), 2vqo(A), 2vqq(A), 2vqv(A), 2vqw(G), 4cbt(A), 4cby(A), 5a2s(A), 5zoo(G), 5zop(G), 6fyz(A),
		2. Ligand: TFG × 3 2,2,2-Trifluoro-1-{5-[(3-Phenyl-5,6- Dihydroimidazo[1,2-A]pyrazin-7(8h)-Yl)carbonyl] thiophen-2- Yl}ethane-1,1-Diol PDB codes: 2vqj(A), 2vqo(A), 2vqq(A).
		3. Ligand: EBE × 2 (2~{s})-2-(2-Fluorophenyl)-2-[4-(2-Methylpyrimidin-5- Yl)phenyl]-~{N}-Oxidanyl-Ethanamide PDB codes: 6fyz(A),
		4. Ligand: HA3 × 2 N-Hydroxy-5-[(3-Phenyl-5,6-Dihydroimidazo[1, 2-A]pyrazin-7(8h)-Yl)carbonyl]thiophene-2- Carboxamide PDB codes: 2vqm(A), 2vqv(A).
		5. Ligand: 9F4 × 1 (1r,2r,3r)-2-[4-(5-Fluoranylpyrimidin-2-Yl)phenyl]-N- Oxidanyl-3-Phenyl-Cyclopropane-1-Carboxamide PDB code: 4cbt(A).
		6. Ligand: KEE × 1 (1r,2r,3r)-2-[4-(1,3-Oxazol-5-Yl)phenyl]-N-Oxidanyl-3- Phenyl-Cyclopropane-1-Carboxamide PDB code: 4cby(A).
		7. Ligand: OTF × 1 (1s,2s,3s)-1-Fluoranyl-2-[4-(5- Fluoranylpyrimidin-2-Yl)phenyl]-N-Oxidanyl-3-Phenyl- Cyclopropane- 1-Carboxamide PDB code: 5a2s(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: TFG × 2 2,2,2-Trifluoro-1-{5-[(3-Phenyl-5,6- Dihydroimidazo[1,2-A]pyrazin-7(8h)-Yl)carbonyl] thiophen-2- Yl}ethane-1,1-Diol PDB codes: 2vqo(A), 2vqq(A).
		2. Ligand: HA3 × 1 N-Hydroxy-5-[(3-Phenyl-5,6-Dihydroimidazo[1, 2-A]pyrazin-7(8h)-Yl)carbonyl]thiophene-2- Carboxamide PDB code: 2vqv(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: DIO × 1 1,4-Diethylene dioxide PDB code: 2vqj(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 3 Sulfate ion PDB codes: 2vqj(A), 2vqo(A), 2vqq(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 2vqj(A), 2vqv(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 2vqj(A).