Ligand clusters for UniProt code P42260

Ligand clusters for P42260: Glutamate receptor ionotropic, kainate 2 from Rattus norvegicus

		Top 6 (of 22) ligand clusters Cluster 1. 6 ligand types 33 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 3 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 2 ligands
Representative protein: 5kufA

Structures

PDB		Schematic diagram
5kufA
4uqqA
5kuhA
3h6gA
3qluC
		more ...

Cluster 1 contains 6 ligand types

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Ligand		Description
		1. Ligand: GLU × 19 PDB codes: 1s50(A), 1s7y(A), 2i0b(A), 2i0c(A), 2xxr(A), 2xxu(A), 2xxw(A), 2xxx(A), 3g3f(A), 3g3g(A), 3g3h(A), 3g3i(A), 3g3j(A), 3g3k(A), 4bdl(A), 4bdn(A), 4bdq(A), 4uqq(A), 5cmk(A).
		2. Ligand: KAI × 7 3-(Carboxymethyl)-4-Isopropenylproline PDB codes: 1tt1(A), 2xxt(A), 2xxv(A), 2xxy(A), 4bdm(A), 4bdo(A), 4bdr(A).
		3. Ligand: SYM × 3 2s,4r-4-Methylglutamate PDB codes: 1sd3(A), 5cmm(A), 5kuf(A).
		4. Ligand: DOQ × 2 (2s,3s,4s)-2-Carboxy-4-[(1z,3e,5r)-5-Carboxy-1-Methyl- 1,3-Hexadienyl]-3-Pyrrolidineacetic acid PDB codes: 1yae(A),
		5. Ligand: 11W × 1 (4r)-4-[(2e)-3-{4-[(E)-Phenyldiazenyl]phenyl}prop-2-En- 1-Yl]-L-Glutamic acid PDB code: 4h8i(A).
		6. Ligand: QUS × 1 (S)-2-Amino-3-(3,5-Dioxo-[1,2,4]oxadiazolidin-2-Yl)- Propionic acid PDB code: 1s9t(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 1yae(F).
		2. Ligand: NAG-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 1yae(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: IPA × 1 isopropyl alcohol Isopropyl alcohol PDB code: 3g3k(A).
		2. Ligand: LY5 × 1 (3s,4ar,6s,8ar)-6-{[(2s)-2-Carboxy-4,4- Difluoropyrrolidin-1-Yl]methyl}decahydroisoquinoline- 3- Carboxylic acid PDB code: 5kuh(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG × 3 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3h6g(A), 3h6h(A), 3qlu(C).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 3h6g(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG × 2 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3h6g(A), 3h6h(A).