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EBI
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PDBsum
Ligand clusters for UniProt code P28327
Ligand clusters for P28327: Rhodopsin kinase GRK1 from Bos taurus
Top 6 (of 11) ligand clusters
Cluster 1.
6 ligand types
27 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
2 ligand types
4 ligands
Cluster 6.
1 ligand type
6 ligands
Representative protein: 3c4wB
Structures
PDB
Schematic diagram
3c4w
B
4l9i
A
3t8o
A
4wbo
A
4pni
A
more ...
Cluster 1 contains 6 ligand types
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Ligand
Description
_Mg
1. Metal:
_MG × 15
PDB codes:
3c4w
(A),
3c4x
(A),
3c4z
(A),
3c50
(A),
3c51
(A),
3qc9
(A),
3t8o
(A).
2. Ligand:
8PR × 1
paroxetine
Paroxetine
PDB code:
4l9i
(A).
3. Ligand:
ANW × 1
amlexanox
2-Amino-7-(1-Methylethyl)-5-Oxo-5h-Chromeno[2,3- B]pyridine-3-Carboxylic acid
PDB code:
4wbo
(A).
4. Ligand:
ADP × 5
Adenosine-5'-Diphosphate
PDB codes:
3c4z
(A),
3c50
(A),
3c51
(A),
3qc9
(A).
5. Ligand:
ATP × 4
Adenosine-5'-Triphosphate
PDB codes:
3c4w
(A),
3c4x
(A),
3t8o
(A).
6. Ligand:
KQQ × 1
3-[(2-{[1-(N,N-Dimethylglycyl)-6-Methoxy-4,4-Dimethyl- 1,2,3,4-Tetrahydroquinolin-7-Yl]amino}-7h-
Pyrrolo[2,3- D]pyrimidin-4-Yl)amino]thiophene-2-Carboxamide
PDB code:
4pni
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
MES × 2
2-(N-Morpholino)-Ethanesulfonic acid
PDB codes:
3c50
(A),
4l9i
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3qc9
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3t8o
(A).
Cluster 5 contains 2 ligand types
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Ligand
Description
_Cl
1. Metal:
_CL × 3
PDB codes:
3c4z
(A),
3c50
(A),
4pni
(A).
_Br
2. Metal:
_BR × 1
PDB code:
3c51
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 6
PDB codes:
3c4w
(A),
3c4z
(A),
3c50
(A),
4l9i
(A),
4pni
(A),
4wbo
(A).