Ligand clusters for UniProt code P28063

Ligand clusters for P28063: Proteasome subunit beta type-8 from Mus musculus

		4 ligand clusters Cluster 1. 9 ligand types 13 ligands Cluster 2. 1 ligand type 2 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 8 ligands
Representative protein: 5l65K

Structures

PDB		Schematic diagram
5l65K
5l69K
5l6bK
5l6cK
5l6aK
		more ...

Cluster 1 contains 9 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: 3BV × 1 carfilzomib N-{(2s)-2-[(Morpholin-4-Ylacetyl)amino]-4- Phenylbutanoyl}-L-Leucyl-N-[(2r,3s,4s)-1,3-Dihydroxy- 2,6-Dimethylheptan-4-Yl]-L-Phenylalaninamide PDB code: 5l65(K).
		2. Ligand: BO2 × 1 bortezomib N-[(1r)-1-(Dihydroxyboryl)-3-Methylbutyl]-N-(Pyrazin-2- Ylcarbonyl)-L-Phenylalaninamide PDB code: 5l66(K).
		3. Ligand: MES × 4 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 5l67(K), 5l69(K), 5l6a(K), 5l6b(K).
		4. Ligand: 04C × 2 1,2,4-Trideoxy-4-Methyl-2-{[N-(Morpholin-4-Ylacetyl)-L- Alanyl-O-Methyl-L-Tyrosyl]amino}-1-Phenyl- D-Xylitol PDB codes: 3unf(K), 5l6b(K).
		5. Ligand: 39V × 1 N-[(3-Methyl-1h-Inden-2-Yl)carbonyl]-D-Alanyl-N-[(2s, 4r)-5-Hydroxy-4-Methyl-3-Oxo-1-Phenylpentan- 2-Yl]-L- Tryptophanamide PDB code: 5l67(K).
		6. Ligand: 6N5 × 1 ~{N}-[(2~{s})-1-[[(2~{s})-3-(4-Methoxyphenyl)-1- [[(2~{s},3~{s},4~{r})-4-Methyl-3,5-Bis(oxidanyl)- 1- Phenyl-Pentan-2-Yl]amino]-1-Oxidanylidene-Propan-2- Yl]amino]-1-Oxidanylidene-Propan-2-Yl]-1- Methyl-5~{h}- Indene-2-Carboxamide PDB code: 5l68(K).
		7. Ligand: 6NV × 1 ~{N}-[(2~{r})-1-[[(2~{s})-3-(4-Methoxyphenyl)-1- [[(2~{s},3~{s},4~{r})-4-Methyl-3,5-Bis(oxidanyl)- 1- Phenyl-Pentan-2-Yl]amino]-1-Oxidanylidene-Propan-2- Yl]amino]-1-Oxidanylidene-Propan-2-Yl]-1- Methyl-5~{h}- Indene-2-Carboxamide PDB code: 5l6c(K).
		8. Ligand: 79L × 1 (2~{s})-3-(4-Methoxyphenyl)-~{N}-[(2~{s},3~{s},4~{r})- 4-Methyl-3,5-Bis(oxidanyl)-1-Phenyl-Pentan- 2-Yl]-2- [[(2~{r})-2-(2-Morpholin-4-Ylethanoylamino) propanoyl]amino]propanamide PDB code: 5l6a(K).
		9. Ligand: 79P × 1 (2~{s})-3-(1~{h}-Indol-3-Yl)-~{N}-[(2~{s},3~{s},4~{r})- 4-Methyl-3,5-Bis(oxidanyl)-1-Phenyl-Pentan- 2-Yl]-2- [[(2~{r})-2-(2-Morpholin-4-Ylethanoylamino) propanoyl]amino]propanamide PDB code: 5l69(K).

Cluster 2 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
__K		1. Metal: __K × 2 PDB codes: 3unf(K), 3unh(K).

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Cl		1. Metal: _CL × 1 PDB code: 3unh(K).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mg		1. Metal: _MG × 8 PDB codes: 5l65(K), 5l66(K), 5l67(K), 5l68(K), 5l69(K), 5l6a(K), 5l6b(K), 5l6c(K).