Ligand clusters for UniProt code P20339

Ligand clusters for P20339: Ras-related protein Rab-5A from Homo sapiens

		Top 6 (of 7) ligand clusters Cluster 1. 8 ligand types 28 ligands Cluster 2. 1 ligand type 2 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 7 ligands
Representative protein: 1n6oA

Structures

PDB		Schematic diagram
1n6oA
1n6nA
1n6iA
1n6rA
1n6lA
		more ...

Cluster 1 contains 8 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mg		1. Metal: _MG × 12 PDB codes: 1n6h(A), 1n6i(A), 1n6k(A), 1n6l(A), 1n6n(A), 1n6o(A), 1n6p(A), 1n6r(A), 1r2q(A), 1tu3(A), 3mjh(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 1r2q(A).
		3. Ligand: GNP × 8 Phosphoaminophosphonic acid-Guanylate ester PDB codes: 1n6h(A), 1n6n(A), 1n6o(A), 1n6p(A), 1n6r(A), 1r2q(A), 1tu3(A),
		4. Ligand: GDP × 2 Guanosine-5'-Diphosphate PDB codes: 1n6i(A), 1tu4(A).
		5. Ligand: GTP × 2 Guanosine-5'-Triphosphate PDB codes: 1n6l(A), 3mjh(A).
		6. Ligand: GDP-AF3 × 1 GDP=Guanosine-5'-Diphosphate, AF3=Aluminum fluoride. PDB code: 1n6k(A).
		7. Ligand: SO4 × 1 Sulfate ion PDB code: 1tu4(A).
_Co		8. Metal: _CO × 1 PDB code: 1tu4(A).

Cluster 2 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 1r2q(A),

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1r2q(A).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1r2q(A).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1r2q(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BME × 7 Beta-Mercaptoethanol PDB codes: 1n6h(A), 1n6i(A), 1n6k(A), 1n6l(A), 1n6n(A), 1n6o(A), 1n6r(A).