Ligand clusters for UniProt code P15692

Ligand clusters for P15692: Vascular endothelial growth factor A from Homo sapiens

		Top 6 (of 18) ligand clusters Cluster 1. 1 ligand type 1 ligand Cluster 2. 3 ligand types 3 ligands Cluster 3. 3 ligand types 3 ligands Cluster 4. 3 ligand types 5 ligands Cluster 5. 3 ligand types 3 ligands Cluster 6. 2 ligand types 3 ligands
Representative protein: 3qtkA

Structures

PDB		Schematic diagram
3qtkA
4qafC
1cz8V
5hhcA
4kznA
		more ...

Cluster 1 contains 1 ligand type

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: DPN-DSG-DLY-DGL-DTR-DAS-DSG-DAL-DTR-DAR-DGL-DIL-DAR-DHI-DLE-DPR-DSG-DLE-DSG-DLE-DGL-DGN-DLY-DAR-DAL-DPN-DIL-DSN-DSN-DLE-DTY-DAS-DAS-DPR-DSN-DGN-DSN-DAL-DSG-DLE-DLE-DAL-DGL-DAL-DLY-DLY-DLE-DSG-DAS-DAL-DGN-DAL-DPR × 1 DPN=D-Phenylalanine, DSG=D-Asparagine, DLY=D-Lysine, DGL=D-Glutamic acid, DTR=D-Tryptophan, DAS=D-Aspartic acid, DAL=D-Alanine, DAR=D-Arginine, DIL=D-Isoleucine, DHI=D-Histidine, DLE=D-Leucine, DPR=D-Proline, DGN=D-Glutamine, DSN=D-Serine, DTY=D-Tyrosine. PDB code: 7ll9(A).

Cluster 2 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 5t89(V).
		2. Ligand: ACT × 1 Acetate ion PDB code: 3qtk(A).
		3. Ligand: NAG-NAG-BMA-MAN-MAN-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 4kzn(A).

Cluster 3 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: ACY × 1 acetic acid Acetic acid PDB code: 6z13(V).
		2. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 5o4e(E).
		3. Ligand: TFA × 1 Trifluoroacetic acid PDB code: 3qtk(A).

Cluster 4 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 4gls(E), 5hhc(A), 5hhd(A).
		2. Ligand: ACT × 1 Acetate ion PDB code: 3qtk(A).
		3. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 5o4e(E).

Cluster 5 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: CAC × 1 Cacodylate ion PDB code: 5o4e(E).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 4qaf(C).
		3. Ligand: TFA × 1 Trifluoroacetic acid PDB code: 3qtk(A).

Cluster 6 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 5hhc(A), 5hhd(A).
		2. Ligand: TFA × 1 Trifluoroacetic acid PDB code: 3qtk(A).