Ligand clusters for UniProt code P11021

Ligand clusters for P11021: Endoplasmic reticulum chaperone BiP from Homo sapiens

		Top 6 (of 24) ligand clusters Cluster 1. 16 ligand types 25 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 2 ligand types 2 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 5e84A

Structures

PDB		Schematic diagram
5e84A
6zmdA
6asyA
6cz1A
3iucA
		more ...

Cluster 1 contains 16 ligand types

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Ligand		Description
_Zn		1. Metal: _ZN × 2 PDB codes: 5e84(A),
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 6asy(A).
		3. Ligand: ATP × 4 Adenosine-5'-Triphosphate PDB codes: 3ldl(A), 5e84(A), 5f1x(A), 6asy(A).
		4. Ligand: PO4 × 3 Phosphate ion PDB codes: 5evz(A), 5ex5(A), 5f0x(A).
		5. Ligand: ADP × 2 Adenosine-5'-Diphosphate PDB codes: 3iuc(A), 5evz(A).
		6. Ligand: ANP × 2 Phosphoaminophosphonic acid-Adenylate ester PDB codes: 3ldo(A), 6zmd(A).
		7. Ligand: DTP × 2 2'-Deoxyadenosine 5'-Triphosphate PDB codes: 5ey4(A), 5f0x(A).
		8. Ligand: 3BH × 1 (2r,3r,4s,5r)-2-(6,8-Diaminopurin-9-Yl)-5- (Hydroxymethyl)oxolane-3,4-Diol PDB code: 6dfm(A).
		9. Ligand: 3FD × 1 4-[[(2r,3s,4r,5r)-5-[6-Amino-8-[(3,4-Dichlorophenyl) methylamino]purin-9-Yl]-3,4-Dihydroxy-Oxolan- 2- Yl]methoxymethyl]benzonitrile PDB code: 6cz1(A).
		10. Ligand: 3P1 × 1 8-[(Quinolin-2-Ylmethyl)amino]adenosine PDB code: 3ldp(A).
		11. Ligand: 7DD × 1 7-Deazaadenosine-5'-Diphosphate PDB code: 5ex5(A).
		12. Ligand: 7DT × 1 7-Deazaadenosine-5'-Triphosphate PDB code: 5exw(A).
		13. Ligand: ACP × 1 Phosphomethylphosphonic acid adenylate ester PDB code: 5f2r(A).
		14. Ligand: GBA × 1 8-Bromoadenosine PDB code: 6dfo(A).
		15. Ligand: H5V × 1 7-(2-C-Methyl-Beta-D-Ribofuranosyl)-7h-Pyrrolo[2,3- D]pyrimidin-4-Amine PDB code: 6do2(A).
		16. Ligand: HFY × 1 8-{[(2-Chlorophenyl)methyl]amino}adenosine PDB code: 6dws(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: QMK × 1 ~{N}-[2-[1-[(2~{r},3~{r},4~{s},5~{r})-3,4- Bis(oxidanyl)-5-[[Tris(oxidanyl)-L^{5}- Phosphanyl]oxymethyl]oxolan-2-Yl]-1,2,3-Triazol-4- Yl]ethyl]ethanamide PDB code: 6zmd(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 6asy(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 5e84(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 6asy(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 6asy(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 6asy(A).
_Ca		2. Metal: _CA × 1 PDB code: 3iuc(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6asy(A).