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Ligand clusters for UniProt code P0CS93

Ligand clusters for P0CS93: Galactose oxidase from Gibberella zeae

Top 6 (of 27) ligand clusters
Cluster 1.
3 ligand types
6 ligands
Cluster 2.
3 ligand types
4 ligands
Cluster 3.
3 ligand types
3 ligands
Cluster 4.
3 ligand types
12 ligands
Cluster 5.
5 ligand types
14 ligands
Cluster 6.
2 ligand types
2 ligands
Representative protein: 1k3iA  
JSmol
 

Structures

PDB   Schematic diagram
1k3iA    
2eidA    
2eibA    
2vz3A    
2vz1A    
 more ...

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: GOL × 4
glycerin
Glycerol
PDB codes: 2wq8(A), 6xlr(A), 6xls(A), 6xlt(A).


 
2. Ligand: GLC × 1
d-glucose
Alpha-D-Glucopyranose
PDB code: 1k3i(A).


 
3. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2wq8(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 6xlr(A).


 
2. Ligand: ACT × 2
Acetate ion
PDB codes: 1t2x(A), 6xls(A).


 
3. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2wq8(A).

 

 Cluster 3 contains 3 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 6xlr(A).


 
2. Ligand: ACT × 1
Acetate ion
PDB code: 6xls(A).


 
3. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2wq8(A).

 

 Cluster 4 contains 3 ligand types

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Ligand Description


 
1. Ligand: ACY × 2
acetic acid
Acetic acid
PDB codes: 1gof(A), 2wq8(A).


 
2. Ligand: ACT × 9
Acetate ion
PDB codes: 1k3i(A), 1t2x(A), 2eib(A), 2jkx(A), 2vz1(A), 2vz3(A), 6xlr(A), 6xls(A), 6xlt(A).


 
3. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2wq8(A).

 

 Cluster 5 contains 5 ligand types

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Ligand Description


 
1. Ligand: ACY × 2
acetic acid
Acetic acid
PDB codes: 1gof(A), 2wq8(A).


 
2. Ligand: ACT × 1
Acetate ion
PDB code: 1t2x(A).

_Cu
 
3. Metal: _CU × 8
PDB codes: 1gof(A), 1gog(A), 1t2x(A), 2eib(A), 2eid(A), 2eie(A), 2vz3(A), 2wq8(A).


 
4. Ligand: ACT × 2
Acetate ion
PDB codes: 2eib(A), 2vz3(A).

Cu1
 
5. Metal: CU1 × 1
PDB code: 2eic(A).

 

 Cluster 6 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 6xlr(A).


 
2. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 2wq8(A).

 

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