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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code P0CS93
Ligand clusters for P0CS93: Galactose oxidase from Gibberella zeae
Top 6 (of 27) ligand clusters
Cluster 1.
3 ligand types
6 ligands
Cluster 2.
3 ligand types
4 ligands
Cluster 3.
3 ligand types
3 ligands
Cluster 4.
3 ligand types
12 ligands
Cluster 5.
5 ligand types
14 ligands
Cluster 6.
2 ligand types
2 ligands
Representative protein: 1k3iA
Structures
PDB
Schematic diagram
1k3i
A
2eid
A
2eib
A
2vz3
A
2vz1
A
more ...
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 4
glycerin
Glycerol
PDB codes:
2wq8
(A),
6xlr
(A),
6xls
(A),
6xlt
(A).
2. Ligand:
GLC × 1
d-glucose
Alpha-D-Glucopyranose
PDB code:
1k3i
(A).
3. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
2wq8
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
6xlr
(A).
2. Ligand:
ACT × 2
Acetate ion
PDB codes:
1t2x
(A),
6xls
(A).
3. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
2wq8
(A).
Cluster 3 contains 3 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
6xlr
(A).
2. Ligand:
ACT × 1
Acetate ion
PDB code:
6xls
(A).
3. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
2wq8
(A).
Cluster 4 contains 3 ligand types
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Ligand
Description
1. Ligand:
ACY × 2
acetic acid
Acetic acid
PDB codes:
1gof
(A),
2wq8
(A).
2. Ligand:
ACT × 9
Acetate ion
PDB codes:
1k3i
(A),
1t2x
(A),
2eib
(A),
2jkx
(A),
2vz1
(A),
2vz3
(A),
6xlr
(A),
6xls
(A),
6xlt
(A).
3. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
2wq8
(A).
Cluster 5 contains 5 ligand types
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Ligand
Description
1. Ligand:
ACY × 2
acetic acid
Acetic acid
PDB codes:
1gof
(A),
2wq8
(A).
2. Ligand:
ACT × 1
Acetate ion
PDB code:
1t2x
(A).
_Cu
3. Metal:
_CU × 8
PDB codes:
1gof
(A),
1gog
(A),
1t2x
(A),
2eib
(A),
2eid
(A),
2eie
(A),
2vz3
(A),
2wq8
(A).
4. Ligand:
ACT × 2
Acetate ion
PDB codes:
2eib
(A),
2vz3
(A).
Cu1
5. Metal:
CU1 × 1
PDB code:
2eic
(A).
Cluster 6 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
6xlr
(A).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
2wq8
(A).