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Ligand clusters for UniProt code P0ACJ8

Ligand clusters for P0ACJ8: cAMP-activated global transcriptional regulator CRP OS=Escherichia coli (strain K12) OX=83333 GN=crp PE=1 SV=1

Top 6 (of 19) ligand clusters
Cluster 1.
2 ligand types
37 ligands
Cluster 2.
2 ligand types
30 ligands
Cluster 3.
2 ligand types
19 ligands
Cluster 4.
4 ligand types
11 ligands
Cluster 5.
3 ligand types
3 ligands
Cluster 6.
1 ligand type
3 ligands
Representative protein: 1hw5A  
JSmol
 

Structures

PDB   Schematic diagram
1hw5A    
2gzwA    
3qopA    
4i02A    
3kccA    
 more ...

 

 Cluster 1 contains 2 ligand types

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Ligand Description


 
1. Ligand: CMP × 36
Adenosine-3',5'-Cyclic-Monophosphate
PDB codes: 1lb2(A), 1cgp(A), 1g6n(A), 1hw5(A), 1i5z(A), 1i6x(A), 1j59(A), 1o3q(A), 1o3r(A), 1o3s(A), 1o3t(A), 1run(A), 1ruo(A), 1zrc(A), 1zrd(A), 1zre(A), 1zrf(A), 2cgp(A), 2gzw(A), 3iyd(G), 3kcc(A), 3n4m(A), 3qop(A), 3rdi(A), 3rou(A), 3rpq(A), 3ryp(A), 3ryr(A), 4ft8(A), 4hzf(A), 4i01(A), 4i02(A), 4i09(A), 4i0a(A), 4i0b(A), 5ciz(A).


 
2. Ligand: SP1 × 1
6-(6-Amino-Purin-9-Yl)-2-Thioxo-Tetrahydro-2-Furo[3,2- D][1,3,2]dioxaphosphinine-2,7-Diol
PDB code: 4r8h(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: CMP × 29
Adenosine-3',5'-Cyclic-Monophosphate
PDB codes: 1cgp(A), 1g6n(A), 1hw5(A), 1i5z(A), 1i6x(A), 1j59(A), 1o3t(A), 1run(A), 1ruo(A), 1zrc(A), 1zrd(A), 1zre(A), 1zrf(A), 2gzw(A), 3iyd(G), 3kcc(A), 3qop(A), 3rdi(A), 3rou(A), 3rpq(A), 3ryp(A), 3ryr(A), 4ft8(A), 4hzf(A), 4i01(A), 4i02(A), 4i09(A), 4i0a(A), 4i0b(A).


 
2. Ligand: SP1 × 1
6-(6-Amino-Purin-9-Yl)-2-Thioxo-Tetrahydro-2-Furo[3,2- D][1,3,2]dioxaphosphinine-2,7-Diol
PDB code: 4r8h(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: CMP × 18
Adenosine-3',5'-Cyclic-Monophosphate
PDB codes: 1hw5(A), 1i5z(A), 1i6x(A), 1o3q(A), 1o3r(A), 1o3s(A), 1zrf(A), 2cgp(A), 2gzw(A), 3kcc(A), 3rou(A), 3rpq(A), 3ryr(A), 4hzf(A), 4i01(A), 4i02(A), 4i0a(A), 4i0b(A).


 
2. Ligand: SP1 × 1
6-(6-Amino-Purin-9-Yl)-2-Thioxo-Tetrahydro-2-Furo[3,2- D][1,3,2]dioxaphosphinine-2,7-Diol
PDB code: 4r8h(A).

 

 Cluster 4 contains 4 ligand types

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Ligand Description


 
1. Ligand: GOL × 7
glycerin
Glycerol
PDB codes: 3ryp(A), 4hzf(A), 4i0a(A), 4r8h(A),


 
2. Ligand: TRS × 2
tromethamine
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB codes: 1i5z(A), 1i6x(A).


 
3. Ligand: DIO × 1
1,4-Diethylene dioxide
PDB code: 1zrf(A).


 
4. Ligand: PO4 × 1
Phosphate ion
PDB code: 3rpq(A).

 

 Cluster 5 contains 3 ligand types

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Ligand Description


 
1. Ligand: TRS × 1
tromethamine
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB code: 1i5z(A).


 
2. Ligand: PEG × 1
Di(hydroxyethyl)ether
PDB code: 3n4m(A).


 
3. Ligand: PRO × 1
PDB code: 3fwe(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: CMP × 3
Adenosine-3',5'-Cyclic-Monophosphate
PDB codes: 1zrf(A), 2gzw(A), 3rpq(A).

 

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