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Ligand clusters for UniProt code P0A6F3

Ligand clusters for P0A6F3: Glycerol kinase OS=Escherichia coli (strain K12) OX=83333 GN=glpK PE=1 SV=2

Top 6 (of 8) ligand clusters
Cluster 1.
9 ligand types
24 ligands
Cluster 2.
3 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
2 ligands
Representative protein: 1bo5O  
JSmol
 

Structures

PDB   Schematic diagram
1bo5O    
1gljY    
1bwfY    
1bu6O    
3ezwA    
 more ...

 

 Cluster 1 contains 9 ligand types

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Ligand Description


 
1. Ligand: ADP × 5
Adenosine-5'-Diphosphate
PDB codes: 1glb(G), 1glc(G), 1gld(G), 1gle(G), 1glf(O).


 
2. Ligand: GOL × 10
glycerin
Glycerol
PDB codes: 1bo5(O), 1bot(O), 1bu6(O), 1bwf(Y), 1gla(G), 1glb(G), 1glf(O), 1glj(Y), 1gll(Y), 3ezw(A).

_Mg
 
3. Metal: _MG × 1
PDB code: 1glc(G).


 
4. Ligand: G3H × 3
Glyceraldehyde-3-Phosphate
PDB codes: 1glc(G), 1gld(G), 1gle(G).


 
5. Ligand: ACP × 1
Phosphomethylphosphonic acid adenylate ester
PDB code: 1gll(Y).


 
6. Ligand: ATS × 1
Gamma-Arsono-Beta, Gamma-Methyleneadenosine-5'- Diphosphate
PDB code: 1glj(Y).


 
7. Ligand: ATF × 1
Phosphodifluoromethylphosphonic acid-Adenylate ester
PDB code: 1bwf(Y).


 
8. Ligand: SO4 × 1
Sulfate ion
PDB code: 1bu6(O).

_Zn
 
9. Metal: _ZN × 1
PDB code: 1gle(G).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: FBP × 1
Beta-Fructose-1,6-Diphosphate
PDB code: 1bo5(O).


 
2. Ligand: PO4 × 1
Phosphate ion
PDB code: 1glf(O).


 
3. Ligand: SO4 × 1
Sulfate ion
PDB code: 1bu6(O).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code: 1bot(O).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 3ezw(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 3ezw(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Zn
 
1. Metal: _ZN × 2
PDB codes: 1glc(G), 1gle(G).

 

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