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Ligand clusters for UniProt code P08427
Ligand clusters for P08427: Pulmonary surfactant-associated protein A OS=Rattus norvegicus GN=Sftpa1 PE=1 SV=3
Top 6 (of 7) ligand clusters
Cluster 1.
9 ligand types
27 ligands
Cluster 2.
2 ligand types
5 ligands
Cluster 3.
2 ligand types
3 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
4 ligand types
10 ligands
Representative protein: 1r13A
Structures
PDB
Schematic diagram
1r13
A
4wre
A
3par
A
1r14
A
4wrf
A
more ...
Cluster 1 contains 9 ligand types
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Ligand
Description
_Ca
1. Metal:
_CA × 13
PDB codes:
1r13
(A),
3pak
(A),
3paq
(A),
3par
(A),
3pbf
(A),
4wr9
(A),
4wrc
(A),
4wre
(A),
4wrf
(A),
4wuw
(A),
4wux
(A),
5ffs
(A),
5fft
(A).
2. Ligand:
MAN × 3
Alpha-D-Mannose
PDB codes:
3pak
(A),
4wrf
(A),
4wux
(A).
_Cl
3. Metal:
_CL × 3
PDB codes:
4wrc
(A),
4wre
(A),
4wrf
(A).
4. Ligand:
INS × 2
1,2,3,4,5,6-Hexahydroxy-Cyclohexane
PDB codes:
4wre
(A),
4wuw
(A).
5. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
1r13
(A),
3par
(A).
6. Ligand:
GOL × 1
Glycerol
PDB code:
3pbf
(A).
7. Ligand:
HEZ × 1
Hexane-1,6-Diol
PDB code:
4wre
(A).
8. Ligand:
MMA × 1
O1-Methyl-Mannose
PDB code:
3paq
(A).
_Sm
9. Metal:
_SM × 1
PDB code:
1r14
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
SO4 × 3
Sulfate ion
PDB codes:
3pak
(A),
3paq
(A),
3par
(A).
2. Ligand:
MES × 2
2-(N-Morpholino)-Ethanesulfonic acid
PDB codes:
1r13
(A),
1r14
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
HEZ × 2
Hexane-1,6-Diol
PDB codes:
4wrc
(A),
4wrf
(A).
2. Ligand:
GOL × 1
Glycerol
PDB code:
3pbf
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
MAN × 1
Alpha-D-Mannose
PDB code:
4wux
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
MAN × 1
Alpha-D-Mannose
PDB code:
4wux
(A).
Cluster 6 contains 4 ligand types
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Ligand
Description
_Ca
1. Metal:
_CA × 6
PDB codes:
4wr9
(A),
4wrc
(A),
4wre
(A),
4wrf
(A),
4wuw
(A),
4wux
(A).
_Na
2. Metal:
_NA × 2
PDB codes:
3pak
(A),
3paq
(A).
3. Ligand:
GOL × 1
Glycerol
PDB code:
3pbf
(A).
_Sm
4. Metal:
_SM × 1
PDB code:
1r14
(A).