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Ligand clusters for UniProt code P08427

Ligand clusters for P08427: Pulmonary surfactant-associated protein A OS=Rattus norvegicus GN=Sftpa1 PE=1 SV=3

Top 6 (of 7) ligand clusters
Cluster 1.
9 ligand types
27 ligands
Cluster 2.
2 ligand types
5 ligands
Cluster 3.
2 ligand types
3 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
4 ligand types
10 ligands
Representative protein: 1r13A  
JSmol
 

Structures

PDB   Schematic diagram
1r13A    
4wreA    
3parA    
1r14A    
4wrfA    
 more ...

 

 Cluster 1 contains 9 ligand types

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Ligand Description

_Ca
 
1. Metal: _CA × 13
PDB codes: 1r13(A), 3pak(A), 3paq(A), 3par(A), 3pbf(A), 4wr9(A), 4wrc(A), 4wre(A), 4wrf(A), 4wuw(A), 4wux(A), 5ffs(A), 5fft(A).


 
2. Ligand: MAN × 3
Alpha-D-Mannose
PDB codes: 3pak(A), 4wrf(A), 4wux(A).

_Cl
 
3. Metal: _CL × 3
PDB codes: 4wrc(A), 4wre(A), 4wrf(A).


 
4. Ligand: INS × 2
1,2,3,4,5,6-Hexahydroxy-Cyclohexane
PDB codes: 4wre(A), 4wuw(A).


 
5. Ligand: SO4 × 2
Sulfate ion
PDB codes: 1r13(A), 3par(A).


 
6. Ligand: GOL × 1
Glycerol
PDB code: 3pbf(A).


 
7. Ligand: HEZ × 1
Hexane-1,6-Diol
PDB code: 4wre(A).


 
8. Ligand: MMA × 1
O1-Methyl-Mannose
PDB code: 3paq(A).

_Sm
 
9. Metal: _SM × 1
PDB code: 1r14(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: SO4 × 3
Sulfate ion
PDB codes: 3pak(A), 3paq(A), 3par(A).


 
2. Ligand: MES × 2
2-(N-Morpholino)-Ethanesulfonic acid
PDB codes: 1r13(A), 1r14(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: HEZ × 2
Hexane-1,6-Diol
PDB codes: 4wrc(A), 4wrf(A).


 
2. Ligand: GOL × 1
Glycerol
PDB code: 3pbf(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: MAN × 1
Alpha-D-Mannose
PDB code: 4wux(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: MAN × 1
Alpha-D-Mannose
PDB code: 4wux(A).

 

 Cluster 6 contains 4 ligand types

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Ligand Description

_Ca
 
1. Metal: _CA × 6
PDB codes: 4wr9(A), 4wrc(A), 4wre(A), 4wrf(A), 4wuw(A), 4wux(A).

_Na
 
2. Metal: _NA × 2
PDB codes: 3pak(A), 3paq(A).


 
3. Ligand: GOL × 1
Glycerol
PDB code: 3pbf(A).

_Sm
 
4. Metal: _SM × 1
PDB code: 1r14(A).

 

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