Ligand clusters for UniProt code P07862

Ligand clusters for P07862: D-alanine--D-alanine ligase B OS=Escherichia coli (strain K12) GN=ddlB PE=1 SV=3

		6 ligand clusters Cluster 1. 9 ligand types 25 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 3 ligands Cluster 4. 1 ligand type 3 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 1iovA

Structures

PDB		Schematic diagram
1iovA
1iowA
2dlnA
4c5cA
4c5aA
		more ...

Cluster 1 contains 9 ligand types

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Ligand		Description
		1. Ligand: ADP × 3 Adenosine-5'-Diphosphate PDB codes: 1iov(A), 1iow(A), 2dln(A).
_Mg		2. Metal: _MG × 12 PDB codes: 1iov(A), 1iow(A), 2dln(A), 4c5a(A), 4c5b(A), 4c5c(A),
		3. Ligand: POB × 1 2-[(1-Amino-Ethyl)-Phosphate-Phosphinoyloxy]-Butyric acid PDB code: 1iov(A).
		4. Ligand: PHY × 2 1(s)-Aminoethyl-(2-Carboxypropyl)phosphoryl- Phosphinic acid PDB codes: 1iow(A), 2dln(A).
		5. Ligand: ADP × 2 Adenosine-5'-Diphosphate PDB codes: 4c5a(A), 4c5b(A).
		6. Ligand: DAL-DAL × 2 DAL=D-Alanine. PDB codes: 4c5b(A), 4c5c(A).
		7. Ligand: ATP × 1 Adenosine-5'-Triphosphate PDB code: 4c5c(A).
		8. Ligand: CO3 × 1 Carbonate ion PDB code: 4c5b(A).
		9. Ligand: DS0 × 1 [(4r)-4-Azanyl-4,5-Dihydro-1,2-Oxazol-3-Yl] dihydrogen phosphate PDB code: 4c5a(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLU-ASN-LEU-TYR-PHE-GLN-GLY-ALA × 1 PDB code: 4c5a(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 4c5a(A), 4c5b(A), 4c5c(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 4c5a(A), 4c5b(A), 4c5c(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 1 PDB code: 4c5c(A).
		2. Ligand: IMD × 1 Imidazole PDB code: 4c5b(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Mg		1. Metal: _MG × 1 PDB code: 1iov(A).