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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P06756

Ligand clusters for P06756: Integrin alpha-V OS=Homo sapiens OX=9606 GN=ITGAV PE=1 SV=2

Top 6 (of 41) ligand clusters
Cluster 1.
14 ligand types
35 ligands
 Cluster 2.
8 ligand types
27 ligands
 Cluster 3.
5 ligand types
24 ligands
 Cluster 4.
4 ligand types
17 ligands
 Cluster 5.
5 ligand types
22 ligands
 Cluster 6.
4 ligand types
15 ligands
Representative protein: 4g1eA  
JSmol
 

Structures

PDB   Schematic diagram
4g1eA    
4g1mA    
4o02A    
3ijeA    
6msuA    
 more ...

 

 Cluster 1 contains 14 ligand types

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 4mmz(A),


 
2. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 9
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB codes: 3ije(A), 4o02(A), 4um8(A), 4um9(A), 5ffg(A), 6djp(A), 6uja(A), 6ujb(A), 6ujc(A).


 
3. Ligand: NAG-NAG-BMA-MAN-BMA-MAN × 7
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB codes: 4mmx(A), 4mmy(A), 4mmz(A), 6mk0(A), 6msl(A), 6msu(A), 6naj(A).


 
4. Ligand: NAG-NAG × 4
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 1jv2(A), 1l5g(A), 1m1x(A), 1u8c(A).


 
5. Ligand: MAN-MAN × 2
MAN=Alpha-D-Mannose.
PDB codes: 5nem(A), 5net(A).


 
6. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 2
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB codes: 4g1m(A), 5ffo(A).


 
7. Ligand: NAG-NAG-MAN × 2
MAN=Alpha-D-Mannose, NAG=N-Acetyl-D-Glucosamine.
PDB codes: 5nem(A), 5ner(A).


 
8. Ligand: ARG-GLY-ASP-PHE-MVA × 1
MVA=N-Methylvaline.
PDB code: 1l5g(A).


 
9. Ligand: GLY-ARG-ARG-GLY-ASP-LEU-ALA-THR-ILE-HIS × 1
PDB code: 6om2(A).


 
10. Ligand: JUY × 1
(2s)-2-[(1,3-Benzothiazole-2-Carbonyl)amino]-4-{[5-(1, 8-Naphthyridin-2-
Yl)pentanoyl]amino}butanoic acid
PDB code: 6mk0(A).


 
11. Ligand: NAG-BMA-MAN-MAN-NAG × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 6om2(A).


 
12. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 4g1e(A).


 
13. Ligand: NAG-NAG-MAN-MAN × 1
MAN=Alpha-D-Mannose, NAG=N-Acetyl-D-Glucosamine.
PDB code: 5net(A).


 
14. Ligand: VAL-ILE-ALA-ARG-GLY-ASP-TRP-ASN × 1
PDB code: 4mmy(A).

 

 Cluster 2 contains 8 ligand types

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Ligand Description


 
1. Ligand: NAG × 10
n-acetylglucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1jv2(A), 1l5g(A), 1m1x(A), 1u8c(A), 4mmz(A), 6mk0(A), 6naj(A), 6uja(A), 6ujb(A), 6ujc(A).


 
2. Ligand: NAG-NAG × 7
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 3ije(A), 4g1m(A), 4mmx(A), 4mmy(A), 6djp(A), 6msl(A), 6msu(A).


 
3. Ligand: NAG-NAG-BMA × 3
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose.
PDB codes: 4g1e(A), 4o02(A), 5ffg(A).


 
4. Ligand: NAG-NAG-MAN × 3
MAN=Alpha-D-Mannose, NAG=N-Acetyl-D-Glucosamine.
PDB codes: 5nem(A), 5ner(A), 5net(A).


 
5. Ligand: NAG-NAG-BMA-MAN × 1
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose, BMA=Beta-D-Mannose.
PDB code: 4um9(A).


 
6. Ligand: NAG-NAG-BMA-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose, BMA=Beta-D-Mannose.
PDB code: 4um8(A).


 
7. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 5ffo(A).


 
8. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 6om2(A).

 

 Cluster 3 contains 5 ligand types

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Ligand Description


 
1. Ligand: NAG-NAG × 13
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 1jv2(A), 1l5g(A), 1m1x(A), 1u8c(A), 4mmz(A), 4um9(A), 5ffg(A), 6djp(A), 6mk0(A), 6naj(A), 6uja(A), 6ujb(A), 6ujc(A).


 
2. Ligand: NAG-NAG-BMA-MAN × 6
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB codes: 4g1e(A), 4mmx(A), 4mmy(A), 4um8(A), 6msl(A), 6msu(A).


 
3. Ligand: NAG-NAG-BMA × 2
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose.
PDB codes: 5ffo(A), 6om2(A).


 
4. Ligand: NAG-NAG-BMA-MAN-MAN × 2
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB codes: 3ije(A), 4g1m(A).


 
5. Ligand: NAG-NAG-BMA-MAN-BMA-MAN × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 4o02(A).

 

 Cluster 4 contains 4 ligand types

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Ligand Description


 
1. Ligand: NAG × 13
n-acetylglucosamine
N-Acetyl-D-Glucosamine
PDB codes: 3ije(A), 4g1e(A), 4mmx(A), 4mmy(A), 4o02(A), 5ffo(A), 5nem(A), 5ner(A), 5net(A), 6djp(A), 6msl(A), 6msu(A), 6om2(A).


 
2. Ligand: NAG-NAG × 2
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 4g1m(A), 4um9(A).


 
3. Ligand: NAG-NAG-BMA-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose, BMA=Beta-D-Mannose.
PDB code: 4um8(A).


 
4. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 5ffg(A).

 

 Cluster 5 contains 5 ligand types

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Ligand Description


 
1. Ligand: NAG × 4
n-acetylglucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1jv2(A), 1l5g(A), 1m1x(A), 1u8c(A).


 
2. Ligand: NAG-NAG-BMA-MAN × 7
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB codes: 4g1e(A), 4mmx(A), 4mmy(A), 5ffo(A), 6msl(A), 6msu(A), 6om2(A).


 
3. Ligand: NAG-NAG × 6
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 3ije(A), 4g1m(A), 4mmz(A), 4um9(A), 6mk0(A), 6naj(A).


 
4. Ligand: NAG-NAG-MAN-MAN × 3
MAN=Alpha-D-Mannose, NAG=N-Acetyl-D-Glucosamine.
PDB codes: 5nem(A), 5ner(A), 5net(A).


 
5. Ligand: NAG-NAG-BMA × 2
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose.
PDB codes: 4um8(A), 5ffg(A).

 

 Cluster 6 contains 4 ligand types

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Ligand Description


 
1. Ligand: NAG × 3
n-acetylglucosamine
N-Acetyl-D-Glucosamine
PDB codes: 4mmz(A), 6mk0(A), 6naj(A).


 
2. Ligand: NAG-NAG × 7
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 3ije(A), 4g1e(A), 4g1m(A), 4mmx(A), 4mmy(A), 6msl(A), 6msu(A).


 
3. Ligand: NAG-NDG × 4
NAG=N-Acetyl-D-Glucosamine, NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose.
PDB codes: 1jv2(A), 1l5g(A), 1m1x(A), 1u8c(A).


 
4. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 4o02(A).

 

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