Ligand clusters for UniProt code P06008

Ligand clusters for P06008: Reaction center protein H chain from Blastochloris viridis

		Top 6 (of 24) ligand clusters Cluster 1. 6 ligand types 84 ligands Cluster 2. 4 ligand types 13 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 5 ligand types 12 ligands Cluster 5. 2 ligand types 37 ligands Cluster 6. 2 ligand types 4 ligands
Representative protein: 1dxrH

Structures

PDB		Schematic diagram
1dxrH
3t6eH
6prcH
6ziaH
6zhwH
		more ...

Cluster 1 contains 6 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3t6e(H).
		2. Ligand: LDA × 51 Lauryl dimethylamine-N-Oxide PDB codes: 1dxr(H), 1prc(H), 1r2c(H), 1vrn(H), 2i5n(H), 2jbl(H), 2prc(H), 3d38(H), 3g7f(H), 3prc(H), 3t6e(H), 5nj4(H), 5o4c(H), 5o64(H), 5prc(H), 6et5(H), 6prc(H), 6zhw(H), 6zi4(H), 6zi5(H), 6zi6(H), 6zi9(H), 6zia(H), 6zid(H), 7prc(H),
		3. Ligand: SO4 × 26 Sulfate ion PDB codes: 1dxr(H), 1prc(H), 1r2c(H), 1vrn(H), 2i5n(H), 2jbl(H), 2prc(H), 3d38(H), 3g7f(H), 3prc(H), 3t6e(H), 5nj4(H), 5o4c(H), 5o64(H), 5prc(H), 6et5(H), 6prc(H), 6zhw(H), 6zi4(H), 6zi5(H), 6zi6(H), 6zi9(H), 6zia(H), 6zid(H), 7prc(H).
		4. Ligand: OTP × 4 (2e,6e,10e,14e,18e,22e,26e)-3,7,11,15,19,23,27,31- Octamethyldotriaconta-2,6,10,14,18,22,26,30- Octaenyl trihydrogen diphosphate PDB codes: 4cas(D), 5m7j(D), 5m7k(D), 5m7l(D).
		5. Ligand: HTO × 1 Heptane-1,2,3-Triol PDB code: 3t6e(H).
		6. Ligand: UNL × 1 Unknown ligand PDB code: 2i5n(H).

Cluster 2 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: HTO × 10 Heptane-1,2,3-Triol PDB codes: 5nj4(H), 5o4c(H), 5o64(H), 6zhw(H), 6zi4(H), 6zi5(H), 6zi6(H), 6zi9(H), 6zia(H), 6zid(H).
		2. Ligand: DGA × 1 Diacyl glycerol PDB code: 3t6e(H).
		3. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 3t6e(H).
		4. Ligand: UNL × 1 Unknown ligand PDB code: 2i5n(H).

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BCB × 1 Bacteriochlorophyll b PDB code: 6et5(H).

Cluster 4 contains 5 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3t6e(H).
		2. Ligand: HTO × 6 Heptane-1,2,3-Triol PDB codes: 5nj4(H), 6zhw(H), 6zi6(H), 6zi9(H), 6zia(H), 6zid(H).
		3. Ligand: SO4 × 3 Sulfate ion PDB codes: 1r2c(H), 3d38(H), 5o64(H).
		4. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 3t6e(H).
		5. Ligand: PO4 × 1 Phosphate ion PDB code: 2wjm(H).

Cluster 5 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: LDA × 23 Lauryl dimethylamine-N-Oxide PDB codes: 1dxr(H), 1r2c(H), 1vrn(H), 2i5n(H), 2jbl(H), 2prc(H), 3d38(H), 3g7f(H), 3prc(H), 3t6e(H), 5nj4(H), 5o4c(H), 5o64(H), 5prc(H), 6prc(H), 6zhw(H), 6zi4(H), 6zi5(H), 6zi6(H), 6zi9(H), 6zia(H), 6zid(H), 7prc(H).
		2. Ligand: SO4 × 14 Sulfate ion PDB codes: 1prc(H), 1vrn(H), 3t6e(H), 5nj4(H), 5o4c(H), 5o64(H), 6et5(H), 6zhw(H), 6zi4(H), 6zi5(H), 6zi6(H), 6zi9(H), 6zia(H), 6zid(H).

Cluster 6 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: SO4 × 3 Sulfate ion PDB codes: 2i5n(H), 3d38(H), 3g7f(H).
		2. Ligand: HTO × 1 Heptane-1,2,3-Triol PDB code: 3t6e(H).