Ligand clusters for UniProt code P05106

Ligand clusters for P05106: Integrin beta-3 OS=Homo sapiens OX=9606 GN=ITGB3 PE=1 SV=2

		Top 6 (of 18) ligand clusters Cluster 1. 9 ligand types 25 ligands Cluster 2. 14 ligand types 77 ligands Cluster 3. 5 ligand types 46 ligands Cluster 4. 5 ligand types 18 ligands Cluster 5. 6 ligand types 10 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 4g1eB

Structures

PDB		Schematic diagram
4g1eB
4g1mB
3ijeB
6msuB
6mslB
		more ...

Cluster 1 contains 9 ligand types

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Ligand		Description
		1. Ligand: NAG × 11 n-acetylglucosamine N-Acetyl-D-Glucosamine PDB codes: 1jv2(B), 1l5g(B), 1m1x(B), 3ije(B), 4mmx(B), 4mmy(B), 4mmz(B), 6mk0(B), 6msl(B), 6msu(B), 6naj(B).
		2. Ligand: NAG-NAG × 4 NAG=N-Acetyl-D-Glucosamine. PDB codes: 3fcs(D), 4g1e(B), 4g1m(B), 4o02(B).
		3. Ligand: NAG-NAG-BMA-MAN-MAN × 2 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose. PDB codes: 3t3m(B), 3t3p(B).
		4. Ligand: NAG-NAG-MAN-MAN × 2 NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose. PDB codes: 3fcs(B), 3nif(B).
		5. Ligand: NAG-NAG-MAN-MAN-MAN × 2 NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose. PDB codes: 3fcu(B), 3nid(B).
		6. Ligand: NAG-NAG-BMA-MAN × 1 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose. PDB code: 4cak(B).
		7. Ligand: NAG-NAG-MAN × 1 NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose. PDB code: 3nig(B).
		8. Ligand: NAG-NAG-MAN-BMA × 1 NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose, BMA=Beta-D-Mannose. PDB code: 1tye(B).
		9. Ligand: NDG × 1 2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose PDB code: 1u8c(B).

Cluster 2 contains 14 ligand types

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Ligand		Description
_Mn		1. Metal: _MN × 26 PDB codes: 1l5g(B), 1m1x(B), 4mmx(B), 4mmy(B), 4mmz(B), 4o02(B), 6mk0(B), 6msl(B), 6msu(B), 6naj(B),
_Mg		2. Metal: _MG × 9 PDB codes: 1tye(B), 3fcs(B), 3fcu(B), 3nid(B), 3nif(B), 3nig(B), 3t3p(B), 6v4p(B).
_Ca		3. Metal: _CA × 24 PDB codes: 1jv2(B), 1tye(B), 1u8c(B), 3fcs(B), 3fcu(B), 3ije(B), 3nid(B), 3nif(B), 3nig(B), 3t3m(B), 3t3p(B), 4g1e(B), 4g1m(B), 6v4p(B),
		4. Ligand: GLY-ARG-GLY-ASP-SER-PRO × 4 PDB codes: 3zdz(B), 3ze0(B), 3ze1(B), 3ze2(D).
		5. Ligand: ALA-GLY-ASP-VAL × 2 PDB codes: 4z7n(B), 4z7o(B).
		6. Ligand: ASP-SER-PRO × 2 PDB codes: 3zdy(B), 3ze2(B).
		7. Ligand: CAC × 2 Cacodylate ion PDB codes: 1tye(B), 3fcu(B).
		8. Ligand: GLY-ARG-GLY × 2 PDB codes: 3zdy(B), 3ze2(B).
		9. Ligand: ALA-GLY-ASP-VAL-NH2 × 1 NH2=Amino group. PDB code: 4z7q(B).
		10. Ligand: ARG-GLY-ASP-PHE-MVA × 1 MVA=N-Methylvaline. PDB code: 1l5g(B).
		11. Ligand: JUY × 1 (2s)-2-[(1,3-Benzothiazole-2-Carbonyl)amino]-4-{[5-(1, 8-Naphthyridin-2- Yl)pentanoyl]amino}butanoic acid PDB code: 6mk0(B).
		12. Ligand: RC2 × 1 N-{3-[5-Oxo-7-(Piperazin-1-Yl)-5h-[1,3,4]thiadiazolo[3, 2-A]pyrimidin-2-Yl]phenyl}glycinamide PDB code: 3t3m(B).
		13. Ligand: VAL-ILE-ALA-ARG-GLY-ASP-TRP-ASN × 1 PDB code: 4mmy(B).
_Cl		14. Metal: _CL × 1 PDB code: 3t3p(B).

Cluster 3 contains 5 ligand types

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Ligand		Description
		1. Ligand: NAG × 24 n-acetylglucosamine N-Acetyl-D-Glucosamine PDB codes: 1jv2(B), 1l5g(B), 1m1x(B), 1tye(B), 1u8c(B), 3fcs(D), 3fcu(B), 3ije(B), 3nid(B), 3nif(B), 3nig(B), 3t3m(B), 3t3p(B), 4g1m(B), 4mmx(B), 4mmy(B), 4mmz(B), 4o02(B), 6mk0(B), 6msl(B), 6msu(B), 6naj(B).
		2. Ligand: NAG-NAG × 19 NAG=N-Acetyl-D-Glucosamine. PDB codes: 3fcs(B), 3ije(B), 3nid(B), 3nif(B), 3nig(B), 3t3m(B), 3t3p(B), 4cak(B), 4g1e(B), 4g1m(B), 4mmx(B), 4mmy(B), 4mmz(B), 4o02(B), 6mk0(B), 6msl(B), 6msu(B), 6naj(B).
		3. Ligand: NAG-NAG-BMA × 1 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose. PDB code: 4cak(B).
		4. Ligand: NAG-NAG-BMA-MAN × 1 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose. PDB code: 4g1e(B).
		5. Ligand: NAG-NAG-MAN × 1 NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose. PDB code: 3fcs(B).

Cluster 4 contains 5 ligand types

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine N-Acetyl-D-Glucosamine PDB code: 4o02(B).
		2. Ligand: NAG-NAG-BMA × 10 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose. PDB codes: 3ije(B), 4g1e(B), 4g1m(B), 4mmx(B), 4mmy(B), 4mmz(B), 6mk0(B), 6msl(B), 6msu(B), 6naj(B).
		3. Ligand: NAG-NDG × 4 NAG=N-Acetyl-D-Glucosamine, NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose. PDB codes: 1jv2(B), 1l5g(B), 1m1x(B), 1u8c(B).
		4. Ligand: NAG-NAG × 2 NAG=N-Acetyl-D-Glucosamine. PDB codes: 3fcs(D), 4cak(B).
		5. Ligand: NAG-NAG-MAN-MAN-MAN × 1 NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose. PDB code: 3fcs(B).

Cluster 5 contains 6 ligand types

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine N-Acetyl-D-Glucosamine PDB code: 6mk0(B).
		2. Ligand: NAG-NDG × 4 NAG=N-Acetyl-D-Glucosamine, NDG=2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose. PDB codes: 1jv2(B), 1l5g(B), 1m1x(B), 1u8c(B).
_Cl		3. Metal: _CL × 2 PDB codes: 4mmz(B),
		4. Ligand: NAG-NAG × 1 NAG=N-Acetyl-D-Glucosamine. PDB code: 6naj(B).
		5. Ligand: NAG-NAG-BMA-MAN × 1 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose. PDB code: 4g1e(B).
_Na		6. Metal: _NA × 1 PDB code: 4mmz(B).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 1 NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose. PDB code: 4g1e(B).