Ligand clusters for UniProt code P00401

Ligand clusters for P00401: Cytochrome c oxidase subunit 1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

		Top 6 (of 9) ligand clusters Cluster 1. 3 ligand types 19 ligands Cluster 2. 2 ligand types 4 ligands Cluster 3. 2 ligand types 5 ligands Cluster 4. 2 ligand types 5 ligands Cluster 5. 2 ligand types 5 ligands Cluster 6. 2 ligand types 18 ligands
Representative protein: 6hu9a

Structures

PDB		Schematic diagram
6hu9a
6t0ba
6ymxa
6ymya
6t15a
		more ...

Cluster 1 contains 3 ligand types

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Ligand		Description
		1. Ligand: PCF × 7 colfosceril palmitate 1,2-Diacyl-Sn-Glycero-3-Phoshocholine PDB codes: 6hu9(a), 6t0b(a), 6t15(a), 6ymx(a), 6ymy(a),
		2. Ligand: PEF × 8 Di-Palmitoyl-3-Sn-Phosphatidylethanolamine PDB codes: 6hu9(a), 6t0b(a), 6t15(a),
		3. Ligand: PTY × 4 Phosphatidylethanolamine PDB codes: 6ymx(a), 6ymy(a),

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: CN3 × 2 (2r,5s,11r,14r)-5,8,11-Trihydroxy-2-(Nonanoyloxy)-5,11- Dioxido-16-Oxo-14-[(Propanoyloxy)methyl]- 4,6,10,12,15- Pentaoxa-5,11-Diphosphanonadec-1-Yl undecanoate PDB codes: 6ymx(a), 6ymy(a).
		2. Ligand: PEF × 2 Di-Palmitoyl-3-Sn-Phosphatidylethanolamine PDB codes: 6t0b(a),

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: PCF × 2 colfosceril palmitate 1,2-Diacyl-Sn-Glycero-3-Phoshocholine PDB codes: 6ymx(a), 6ymy(a).
		2. Ligand: PEF × 3 Di-Palmitoyl-3-Sn-Phosphatidylethanolamine PDB codes: 6hu9(a), 6t0b(a), 6t15(a).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: PEF × 3 Di-Palmitoyl-3-Sn-Phosphatidylethanolamine PDB codes: 6hu9(a), 6t0b(a), 6t15(a).
		2. Ligand: PTY × 2 Phosphatidylethanolamine PDB codes: 6ymx(a), 6ymy(a).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: PEF × 3 Di-Palmitoyl-3-Sn-Phosphatidylethanolamine PDB codes: 6hu9(a), 6t0b(a), 6t15(a).
		2. Ligand: PTY × 2 Phosphatidylethanolamine PDB codes: 6ymx(a), 6ymy(a).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: HEA × 12 Heme-A PDB codes: 6giq(a), 6hu9(a), 6t0b(a), 6t15(a), 6ymx(a), 6ymy(a),
_Cu		2. Metal: _CU × 6 PDB codes: 6giq(a), 6hu9(a), 6t0b(a), 6t15(a), 6ymx(a), 6ymy(a).