Ligand clusters for UniProt code O76083

Ligand clusters for O76083: High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A OS=Homo sapiens GN=PDE9A PE=1 SV=1

		2 ligand clusters Cluster 1. 19 ligand types 68 ligands Cluster 2. 1 ligand type 1 ligand
Representative protein: 3dy8A

Structures

PDB		Schematic diagram
3dy8A
3n3zA
3dyqA
2yy2A
2hd1A
		more ...

Cluster 1 contains 19 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 21 PDB codes: 2hd1(A), 2yy2(A), 3dy8(A), 3dyl(A), 3dyn(A), 3dys(A), 3jsi(A), 3jsw(A), 3k3e(A), 3k3h(A), 3n3z(A), 3qi3(A), 3qi4(A), 4e90(A), 4g2j(A), 4g2l(A), 4gh6(A), 4y86(A), 4y87(A), 4y8c(A), 6a3n(A).
_Zn		2. Metal: _ZN × 19 PDB codes: 2hd1(A), 2yy2(A), 3dyn(A), 3jsi(A), 3jsw(A), 3k3e(A), 3k3h(A), 3n3z(A), 3qi3(A), 3qi4(A), 4e90(A), 4g2j(A), 4g2l(A), 4gh6(A), 4y86(A), 4y87(A), 4y8c(A), 6a3n(A), 6lzz(A).
_Mn		3. Metal: _MN × 3 PDB codes: 3dy8(A), 3dyl(A), 3dys(A).
		4. Ligand: IBM × 4 3-Isobutyl-1-Methylxanthine PDB codes: 2hd1(A), 2yy2(A), 3n3z(A), 3qi4(A).
		5. Ligand: PCG × 3 Cyclic guanosine monophosphate PDB codes: 3dyl(A), 3dyn(A), 3dyq(A).
		6. Ligand: 49D × 2 6-{[(1s)-1-(4-Chlorophenyl)ethyl]amino}-1-Cyclopentyl- 1,5-Dihydro-4h-Pyrazolo[3,4-D]pyrimidin-4- One PDB codes: 4y86(A), 4y8c(A).
		7. Ligand: 5GP × 2 Guanosine-5'-Monophosphate PDB codes: 3dy8(A), 3dys(A).
		8. Ligand: PDB × 2 1-(2-Chlorophenyl)-6-[(2r)-3,3,3-Trifluoro-2- Methylpropyl]-1,7-Dihydro-4h-Pyrazolo[3,4- D]pyrimidin- 4-One PDB codes: 3k3e(A), 3qi3(A).
_Na		9. Metal: _NA × 2 PDB codes: 3dyq(A),
		10. Ligand: 0WF × 1 1-Cyclopentyl-6-[(1r)-1-(3-Phenoxyazetidin-1-Yl)ethyl]- 1,5-Dihydro-4h-Pyrazolo[3,4-D]pyrimidin-4- One PDB code: 4g2j(A).
		11. Ligand: 0WL × 1 1-Cyclopentyl-6-{(1r)-1-[3-(Pyrimidin-2-Yl)azetidin-1- Yl]ethyl}-1,5-Dihydro-4h-Pyrazolo[3,4- D]pyrimidin-4- One PDB code: 4g2l(A).
		12. Ligand: 49E × 1 6-{[(1r)-1-(4-Chlorophenyl)ethyl]amino}-1-Cyclopentyl- 1,5-Dihydro-4h-Pyrazolo[3,4-D]pyrimidin-4- One PDB code: 4y87(A).
		13. Ligand: 7RG × 1 6-[(3s,4s)-4-Methyl-1-(Pyrimidin-2-Ylmethyl)pyrrolidin- 3-Yl]-1-(Tetrahydro-2h-Pyran-4-Yl)-1,5- Dihydro-4h- Pyrazolo[3,4-D]pyrimidin-4-One PDB code: 4e90(A).
		14. Ligand: 9Q9 × 1 1-Cyclopentyl-6-({(2r)-1-[(3s)-3-Fluoropyrrolidin-1- Yl]-1-Oxopropan-2-Yl}amino)-1,5-Dihydro-4h- Pyrazolo[3, 4-D]pyrimidin-4-One PDB code: 6a3n(A).
		15. Ligand: BYE × 1 1-(2-Chlorophenyl)-6-[(2s)-3,3,3-Trifluoro-2- Methylpropyl]-1,7-Dihydro-4h-Pyrazolo[3,4- D]pyrimidin- 4-One PDB code: 3k3h(A).
		16. Ligand: EZU × 1 1-Cyclopentyl-6-[[(2r)-1-(2-Oxa-6-Azaspiro[3.3]heptan- 6-Yl)-1-Oxidanylidene-Propan-2-Yl]amino]-5h- Pyrazolo[3,4-D]pyrimidin-4-One PDB code: 6lzz(A).
		17. Ligand: JAR × 1 6-[(3s,4s)-1-Benzyl-4-Methylpyrrolidin-3-Yl]-1-(1- Methylethyl)-1,5-Dihydro-4h-Pyrazolo[3,4- D]pyrimidin- 4-One PDB code: 3jsw(A).
		18. Ligand: LUO × 1 N-(4-Methoxyphenyl)-N~2~-[1-(2-Methylphenyl)-4-Oxo-4,5- Dihydro-1h-Pyrazolo[3,4-D]pyrimidin-6-Yl]- L- Alaninamide PDB code: 4gh6(A).
		19. Ligand: WTC × 1 6-Benzyl-1-Cyclopentyl-1,5-Dihydro-4h-Pyrazolo[3,4- D]pyrimidin-4-One PDB code: 3jsi(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
_Mn		1. Metal: _MN × 1 PDB code: 3dys(A).