Ligand clusters for UniProt code O57728

Ligand clusters for O57728: V-type ATP synthase alpha chain OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=atpA PE=1 SV=1

		Top 6 (of 29) ligand clusters Cluster 1. 5 ligand types 9 ligands Cluster 2. 4 ligand types 12 ligands Cluster 3. 4 ligand types 6 ligands Cluster 4. 4 ligand types 4 ligands Cluster 5. 3 ligand types 3 ligands Cluster 6. 3 ligand types 14 ligands
Representative protein: 3qiaA

Structures

PDB		Schematic diagram
3qiaA
3mfyA
3m4yA
3qjyA
3nd9A
		more ...

Cluster 1 contains 5 ligand types

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Ligand		Description
		1. Ligand: ACY × 2 acetic acid Acetic acid PDB codes: 3i73(A), 3p20(A).
		2. Ligand: SO4 × 3 Sulfate ion PDB codes: 3i72(A), 3nd8(A), 3se0(A).
		3. Ligand: VO4 × 2 Vanadate ion PDB codes: 3p20(A),
		4. Ligand: ADP × 1 Adenosine-5'-Diphosphate PDB code: 3i73(A).
		5. Ligand: ANP × 1 Phosphoaminophosphonic acid-Adenylate ester PDB code: 3i4l(A).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: ACY × 2 acetic acid Acetic acid PDB codes: 3p20(A), 3se0(A).
		2. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 3qjy(A).
		3. Ligand: MPD × 7 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 3i4l(A), 3i72(A), 3i73(A), 3ikj(A), 3m4y(A), 3mfy(A), 3qg1(A).
		4. Ligand: MRD × 2 (4r)-2-Methylpentane-2,4-Diol PDB codes: 3nd8(A), 3nd9(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: ACY × 1 acetic acid Acetic acid PDB code: 3m4y(A).
		2. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 3sdz(A).
		3. Ligand: MPD × 3 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 3m4y(A), 3mfy(A), 3qg1(A).
		4. Ligand: MRD × 1 (4r)-2-Methylpentane-2,4-Diol PDB code: 3nd8(A).

Cluster 4 contains 4 ligand types

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Ligand		Description
		1. Ligand: ACY × 1 acetic acid Acetic acid PDB code: 3sdz(A).
		2. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 3se0(A).
		3. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 3qia(A).
		4. Ligand: MRD × 1 (4r)-2-Methylpentane-2,4-Diol PDB code: 3nd8(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 3qia(A).
		2. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 3qjy(A).
		3. Ligand: MRD × 1 (4r)-2-Methylpentane-2,4-Diol PDB code: 3nd9(A).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: ACY × 3 acetic acid Acetic acid PDB codes: 3p20(A), 3qg1(A), 5x09(A).
		2. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 3m4y(A).
		3. Ligand: MPD × 10 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 3i4l(A), 3i72(A), 3i73(A), 3ikj(A), 3m4y(A), 3mfy(A), 3nd8(A), 3qia(A), 3qjy(A), 3sdz(A).