spacer
spacer
EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code O15382

Ligand clusters for O15382: Branched-chain-amino-acid aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=BCAT2 PE=1 SV=2

Top 6 (of 26) ligand clusters
Cluster 1.
26 ligand types
61 ligands
 Cluster 2.
22 ligand types
23 ligands
 Cluster 3.
4 ligand types
18 ligands
 Cluster 4.
1 ligand type
1 ligand
 Cluster 5.
3 ligand types
25 ligands
 Cluster 6.
3 ligand types
14 ligands
Representative protein: 1ekfA  
JSmol
 

Structures

PDB   Schematic diagram
1ekfA    
2hdkA    
5i5yA    
2a1hA    
5i5uA    
 more ...

 

 Cluster 1 contains 26 ligand types (of which only 20 are listed. Click for all)

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: KIV × 1
3-Methyl-2-Oxobutanoic acid
PDB code: 1kta(A).


 
2. Ligand: PLP × 25
pyridoxal phosphate
Pyridoxal-5'-Phosphate
PDB codes: 1ekf(A), 1ekp(A), 2a1h(A), 2hdk(A), 2hg8(A), 2hgw(A), 2hgx(A), 2hhf(A), 5bwr(A), 5bwt(A), 5bwu(A), 5bwv(A), 5bww(A), 5bwx(A), 5cr5(A), 5hne(A), 5i5s(A), 5i5t(A), 5i5u(A), 5i5v(A), 5i5w(A), 5i5y(A), 5i60(A), 5mpr(A), 6prx(A).


 
3. Ligand: ACY × 5
acetic acid
Acetic acid
PDB codes: 2hdk(A), 2hgw(A), 2hgx(A).


 
4. Ligand: GBN × 1
gabapentin
[1-(Aminomethyl)cyclohexyl]acetic acid
PDB code: 2a1h(A).


 
5. Ligand: MLE × 1
N-Methylleucine
PDB code: 2hg8(A).


 
6. Ligand: ILP × 1
N-[O-Phosphono-Pyridoxyl]-Isoleucine
PDB code: 1kt8(A).


 
7. Ligand: PMP × 1
4'-Deoxy-4'-Aminopyridoxal-5'-Phosphate
PDB code: 1kta(A).


 
8. Ligand: EDO × 8
1,2-Ethanediol
PDB codes: 5bwu(A), 5bwv(A), 5bww(A), 5bwx(A), 5i5v(A), 5i5y(A), 5mpr(A).


 
9. Ligand: PMP × 1
4'-Deoxy-4'-Aminopyridoxal-5'-Phosphate
PDB code: 5i5x(A).


 
10. Ligand: 4VR × 1
2-[(4-Bromobenzyl)amino]-5-Propyl[1,2,4]triazolo[1,5- A]pyrimidin-7(4h)-One
PDB code: 5bwu(A).


 
11. Ligand: 4VS × 1
5-Ethyl-2-Methyl-7-Oxo-4,7-Dihydropyrazolo[1,5- A]pyrimidine-3-Carbonitrile
PDB code: 5bwt(A).


 
12. Ligand: 4VT × 1
5-Benzyl-7-Oxo-4,7-Dihydropyrazolo[1,5-A]pyrimidine-3- Carbonitrile
PDB code: 5bwr(A).


 
13. Ligand: 4W4 × 1
5-Butyl-2-[(4-Chloro-2-Fluorobenzyl)amino]-7-Oxo-4,7- Dihydropyrazolo[1,5-A]pyrimidine-3-
Carbonitrile
PDB code: 5bwx(A).


 
14. Ligand: 4W6 × 1
7-Oxo-2-[2-Oxo-2-(Pyrrolidin-1-Yl)ethyl]-5-Propyl-4,7- Dihydropyrazolo[1,5-A]pyrimidine-3-
Carbonitrile
PDB code: 5bww(A).


 
15. Ligand: 67W × 1
(2-{[4-(1h-Pyrazol-3-Yl)phenyl]carbamoyl}phenyl)acetic acid
PDB code: 5i60(A).


 
16. Ligand: 67X × 1
(3r)-3-Methyl-1,2,3,4-Tetrahydroquinoline-8-Sulfonamide
PDB code: 5i5t(A).


 
17. Ligand: 67Y × 1
2-Hydroxy-N-[(1r)-1,2,3,4-Tetrahydronaphthalen-1- Yl]acetamide
PDB code: 5i5u(A).


 
18. Ligand: 68A × 1
3,5-Dimethyl-4-Oxo-3,4-Dihydrothieno[2,3-D]pyrimidine- 6-Carboxylic acid
PDB code: 5i5v(A).


 
19. Ligand: 68B × 1
N-(Pyrimidin-5-Yl)benzamide
PDB code: 5i5w(A).


 
20. Ligand: 68C × 1
5-Methyl-4-Oxo-N-(1,3,4-Thiadiazol-2-Yl)-3,4- Dihydrothieno[2,3-D]pyrimidine-6-Carboxamide
PDB code: 5i5x(A).

 + more. Press for full list
 

 

 Cluster 2 contains 22 ligand types (of which only 20 are listed. Click for all)

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: COI × 1
2-Oxo-4-Methylpentanoic acid
PDB code: 2hdk(A).


 
2. Ligand: ACY × 1
acetic acid
Acetic acid
PDB code: 2hgx(A).


 
3. Ligand: GBN × 1
gabapentin
[1-(Aminomethyl)cyclohexyl]acetic acid
PDB code: 2a1h(A).


 
4. Ligand: MLE × 1
N-Methylleucine
PDB code: 2hg8(A).


 
5. Ligand: ILP × 1
N-[O-Phosphono-Pyridoxyl]-Isoleucine
PDB code: 1kt8(A).


 
6. Ligand: EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code: 2hhf(A).


 
7. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 5bwv(A), 5i5v(A).


 
8. Ligand: 4VR × 1
2-[(4-Bromobenzyl)amino]-5-Propyl[1,2,4]triazolo[1,5- A]pyrimidin-7(4h)-One
PDB code: 5bwu(A).


 
9. Ligand: 4VS × 1
5-Ethyl-2-Methyl-7-Oxo-4,7-Dihydropyrazolo[1,5- A]pyrimidine-3-Carbonitrile
PDB code: 5bwt(A).


 
10. Ligand: 4VT × 1
5-Benzyl-7-Oxo-4,7-Dihydropyrazolo[1,5-A]pyrimidine-3- Carbonitrile
PDB code: 5bwr(A).


 
11. Ligand: 4W4 × 1
5-Butyl-2-[(4-Chloro-2-Fluorobenzyl)amino]-7-Oxo-4,7- Dihydropyrazolo[1,5-A]pyrimidine-3-
Carbonitrile
PDB code: 5bwx(A).


 
12. Ligand: 4W6 × 1
7-Oxo-2-[2-Oxo-2-(Pyrrolidin-1-Yl)ethyl]-5-Propyl-4,7- Dihydropyrazolo[1,5-A]pyrimidine-3-
Carbonitrile
PDB code: 5bww(A).


 
13. Ligand: 67W × 1
(2-{[4-(1h-Pyrazol-3-Yl)phenyl]carbamoyl}phenyl)acetic acid
PDB code: 5i60(A).


 
14. Ligand: 67X × 1
(3r)-3-Methyl-1,2,3,4-Tetrahydroquinoline-8-Sulfonamide
PDB code: 5i5t(A).


 
15. Ligand: 67Y × 1
2-Hydroxy-N-[(1r)-1,2,3,4-Tetrahydronaphthalen-1- Yl]acetamide
PDB code: 5i5u(A).


 
16. Ligand: 68B × 1
N-(Pyrimidin-5-Yl)benzamide
PDB code: 5i5w(A).


 
17. Ligand: 68C × 1
5-Methyl-4-Oxo-N-(1,3,4-Thiadiazol-2-Yl)-3,4- Dihydrothieno[2,3-D]pyrimidine-6-Carboxamide
PDB code: 5i5x(A).


 
18. Ligand: 68D × 1
{2-[(5-Methyl-4-Oxo-3,4-Dihydrothieno[2,3-D]pyrimidine- 6-Carbonyl)amino]phenyl}acetic acid
PDB code: 5i5y(A).


 
19. Ligand: 775 × 1
2-[(4-Chlorobenzyl)amino]-7-Oxo-5-Propyl-4,7- Dihydropyrazolo[1,5-A]pyrimidine-3-Carbonitrile
PDB code: 5bwv(A).


 
20. Ligand: EL1 × 1
3-({(3r)-1-[(5-Bromothiophen-2-Yl)carbonyl]pyrrolidin- 3-Yl}oxy)-N-Methyl-2'-
[(Methylsulfonyl)amino]biphenyl- 4-Carboxamide
PDB code: 5cr5(A).

 + more. Press for full list
 

 

 Cluster 3 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: ACY × 3
acetic acid
Acetic acid
PDB codes: 1kt8(A), 1kta(A).


 
2. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 5i5v(A), 5i5x(A).

_Cl
 
3. Metal: _CL × 8
PDB codes: 5bwr(A), 5bwt(A), 5bwv(A), 5bww(A), 5hne(A), 5i5t(A), 5i5x(A), 5i60(A).


 
4. Ligand: EDO × 5
1,2-Ethanediol
PDB codes: 5bwu(A), 5bwv(A), 5bww(A), 5bwx(A), 5i5s(A).

 

 Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code: 2hgw(A).

 

 Cluster 5 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: ACY × 4
acetic acid
Acetic acid
PDB codes: 1kt8(A), 1kta(A), 2hg8(A).


 
2. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 5bww(A), 5bwx(A).


 
3. Ligand: EDO × 19
1,2-Ethanediol
PDB codes: 5bwr(A), 5bwu(A), 5bww(A), 5bwx(A), 5cr5(A), 5hne(A), 5i5s(A), 5i5t(A), 5i5u(A), 5i5v(A), 5i5w(A), 5i60(A).

 

 Cluster 6 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: DMS × 2
dimethyl sulfoxide
Dimethyl sulfoxide
PDB codes: 5i5t(A), 5i5v(A).


 
2. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 5i5x(A).


 
3. Ligand: EDO × 11
1,2-Ethanediol
PDB codes: 5bwr(A), 5bwt(A), 5bwu(A), 5bwv(A), 5bww(A), 5bwx(A), 5hne(A), 5i5s(A), 5i5w(A), 5i60(A), 5mpr(A).

 

spacer
spacer