Ligand clusters for UniProt code O15294

Ligand clusters for O15294: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens OX=9606 GN=OGT PE=1 SV=3

		Top 6 (of 16) ligand clusters Cluster 1. 21 ligand types 64 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 2 ligand types 9 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 2 ligand types 4 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 5lvvA

Structures

PDB		Schematic diagram
5lvvA
5lwvA
6ma3A
6ma5A
6ma4A
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Cluster 1 contains 21 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: NAG × 6 n-acetylglucosamine N-Acetyl-D-Glucosamine PDB codes: 4ay5(A), 4gyw(A), 5hgv(A), 5lvv(A),
		2. Ligand: UDP × 14 Uridine-5'-Diphosphate PDB codes: 3pe3(A), 3pe4(A), 3tax(A), 4ay5(A), 4cdr(A), 4gyw(A), 4gz3(A), 4n39(A), 4n3a(A), 5hgv(A), 5lvv(A), 5lwv(A), 5vie(A), 5vif(A).
		3. Ligand: SO4 × 12 Sulfate ion PDB codes: 3pe4(A), 3tax(A), 4ay6(A), 4cdr(A), 4gyw(A), 4gyy(A), 4gz3(A), 4gz5(A), 4gz6(A), 4xif(A), 5hgv(A).
		4. Ligand: 12V × 10 (2s,3r,4r,5s,6r)-3-(Acetylamino)-4,5- Dihydroxy-6-(Hydroxymethyl)tetrahydro-2h-Thiopyran-2- Yl [(2r,3s,4r,5r)-5-(2,4-Dioxo-3,4- Dihydropyrimidin-1(2h)-Yl)-3,4- Dihydroxytetrahydrofuran-2- Yl]methyl dihydrogen diphosphate PDB codes: 4ay6(A), 4gyy(A), 4gz6(A), 4n3b(A), 4xi9(A), 4xif(A), 5bnw(A), 5c1d(A), 6ibo(A), 6q4m(A).
		5. Ligand: 94T × 2 [[(2~{r},3~{s},4~{r},5~{r})-5-[2,4-Bis(oxidanylidene) pyrimidin-1-Yl]-3,4-Bis(oxidanyl)oxolan-2- Yl]methoxy- Oxidanyl-Phosphoryl] propyl hydrogen phosphate PDB codes: 5npr(A), 5nps(A).
		6. Ligand: 9C1 × 2 2-{[(2e)-4-Chlorobut-2-Enoyl]amino}-2-Deoxy-Beta-D- Glucopyranose PDB codes: 5vie(A), 5vif(A).
		7. Ligand: GLU-THR-GLY-THR-THR-ASN-THR-ALA-THR-THR × 2 PDB codes: 4n39(A), 6ma1(A).
		8. Ligand: UD1 × 2 Uridine-Diphosphate-N-Acetylglucosamine PDB codes: 4gz5(A), 4n3c(A).
		9. Ligand: VAL-THR-PRO-VAL-SER-THR-ALA-ALA × 2 PDB codes: 4xi9(A), 5c1d(A).
		10. Ligand: 0YT × 1 2-(Acetylamino)-2-Deoxy-5-Thio-Beta-D-Glucopyranose PDB code: 4gz3(A).
		11. Ligand: ACE-VAL-THR-PRO-VAL-CYS-THR-ALA-NH2 × 1 ACE=Acetyl group, NH2=Amino group. PDB code: 5npr(A).
		12. Ligand: ACE-VAL-THR-PRO-VAL-SRZ-THR-ALA-NH2 × 1 ACE=Acetyl group, SRZ=Propoxy-L-Serine, NH2=Amino group. PDB code: 4cdr(A).
		13. Ligand: ACY-VAL-THR-PRO-VAL-SER-THR-ALA-NH2 × 1 ACY=Acetic acid, NH2=Amino group. PDB code: 5nps(A).
		14. Ligand: ALA-VAL-SER-ARG-ALA-ALA × 1 PDB code: 6ibo(A).
		15. Ligand: HQV × 1 (2s,3r,4r,5s,6r)-3-[(2e)-But-2-Enoylamino]-4,5- Dihydroxy-6-(Hydroxymethyl)tetrahydro-2h-Thiopyran- 2- Yl [(2r,3s,4r,5r)-5-(2,4-Dioxo-3,4-Dihydropyrimidin- 1(2h)-Yl)-3,4-Dihydroxytetrahydrofuran-2- Yl]methyl dihydrogen diphosphate (non-Preferred name) PDB code: 6e37(A).
		16. Ligand: J9S × 1 N-[(2s)-2-(2-Methoxyphenyl)-2-{[(2-Oxo-1,2- Dihydroquinolin-6-Yl)sulfonyl]amino}acetyl]-N- [(Thiophen-2-Yl)methyl]glycine PDB code: 6ma2(A).
		17. Ligand: J9V × 1 N-[(2r)-2-(2-Methoxyphenyl)-2-{[(2-Oxo-1,2- Dihydroquinolin-6-Yl)sulfonyl]amino}acetyl]-N- [(Thiophen-2-Yl)methyl]glycine PDB code: 6ma5(A).
		18. Ligand: JA4 × 1 N-[(2r)-2-{[(7-Chloro-2-Oxo-1,2-Dihydroquinolin-6-Yl) sulfonyl]amino}-2-(2-Methoxyphenyl)acetyl]-N- [(Thiophen-2-Yl)methyl]glycine PDB code: 6ma1(A).
		19. Ligand: JA7 × 1 5-{2-[(1r)-2-{(Carboxymethyl)[(thiophen-2-Yl) methyl]amino}-2-Oxo-1-{[(2-Oxo-1,2-Dihydroquinolin-6- Yl)sulfonyl]amino}ethyl]phenoxy}pentanoic acid PDB code: 6ma4(A).
		20. Ligand: JAJ × 1 4-{2-[(1r)-2-{(Carboxymethyl)[(thiophen-2-Yl) methyl]amino}-2-Oxo-1-{[(2-Oxo-1,2-Dihydroquinolin-6- Yl)sulfonyl]amino}ethyl]phenoxy}butanoic acid PDB code: 6ma3(A).
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Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: 12V × 1 (2s,3r,4r,5s,6r)-3-(Acetylamino)-4,5-Dihydroxy-6- (Hydroxymethyl)tetrahydro-2h-Thiopyran-2- Yl [(2r,3s, 4r,5r)-5-(2,4-Dioxo-3,4-Dihydropyrimidin-1(2h)-Yl)-3, 4-Dihydroxytetrahydrofuran-2- Yl]methyl dihydrogen diphosphate PDB code: 4gz6(A).
		2. Ligand: UD1 × 1 Uridine-Diphosphate-N-Acetylglucosamine PDB code: 4gz5(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5lwv(A).
		2. Ligand: SO4 × 8 Sulfate ion PDB codes: 3pe4(A), 3tax(A), 4gyw(A), 4gyy(A), 4gz3(A), 4gz5(A), 4gz6(A), 5hgv(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 5lwv(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 4cdr(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: SO4 × 3 Sulfate ion PDB codes: 4cdr(A), 4gz5(A), 4gz6(A).
		2. Ligand: PO4 × 1 Phosphate ion PDB code: 5lwv(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 4cdr(A).