Ligand clusters for UniProt code O07347

Ligand clusters for O07347: Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3

		Top 6 (of 39) ligand clusters Cluster 1. 12 ligand types 31 ligands Cluster 2. 5 ligand types 7 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 3 ligand types 4 ligands Cluster 5. 4 ligand types 4 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 2ffhA

Structures

PDB		Schematic diagram
2ffhA
2j7pA
2cnwA
1okkA
2ng1A
		more ...

Cluster 1 contains 12 ligand types

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Ligand		Description
		1. Ligand: ACT × 1 acetic acid Acetate ion PDB code: 2j46(A).
		2. Ligand: GDP × 6 Guanosine-5'-Diphosphate PDB codes: 1ng1(A), 1o87(A), 2c03(A), 2cnw(A), 2ng1(A).
_Mg		3. Metal: _MG × 6 PDB codes: 1ng1(A), 1o87(A), 1okk(A), 1rj9(B), 2cnw(A), 2j7p(A).
		4. Ligand: GCP × 5 Phosphomethylphosphonic acid guanylate ester PDB codes: 1okk(A), 1rj9(B), 2c04(A).
		5. Ligand: GNP × 4 Phosphoaminophosphonic acid-Guanylate ester PDB codes: 1jpj(A), 1jpn(B), 2j7p(A),
		6. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 2j7p(A), 3ng1(A).
		7. Ligand: SO4 × 2 Sulfate ion PDB codes: 2ffh(A), 3ng1(A).
		8. Ligand: ACY × 1 Acetic acid PDB code: 1jpn(B).
		9. Ligand: ALF × 1 Tetrafluoroaluminate ion PDB code: 2cnw(A).
		10. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 2j45(A).
_Cl		11. Metal: _CL × 1 PDB code: 2j46(A).
_Na		12. Metal: _NA × 1 PDB code: 2j45(A).

Cluster 2 contains 5 ligand types

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Ligand		Description
		1. Ligand: DIO × 2 1,4-Diethylene dioxide PDB codes: 2c03(A), 2ng1(A).
_Cd		2. Metal: _CD × 2 PDB codes: 2ffh(A),
		3. Ligand: ACY × 1 Acetic acid PDB code: 1jpn(B).
		4. Ligand: BZP × 1 N1-Carboxypiperazine PDB code: 1okk(A).
		5. Ligand: SO4 × 1 Sulfate ion PDB code: 1okk(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: 5GP × 1 Guanosine-5'-Monophosphate PDB code: 2cnw(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: DIO × 2 1,4-Diethylene dioxide PDB codes: 2c03(A),
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 2ng1(A).
		3. Ligand: MRD × 1 (4r)-2-Methylpentane-2,4-Diol PDB code: 2j45(A).

Cluster 5 contains 4 ligand types

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Ligand		Description
		1. Ligand: ACY × 1 Acetic acid PDB code: 1ng1(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 2j7p(A).
Iod		3. Metal: IOD × 1 PDB code: 2j7p(A).
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 1okk(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 2j45(A).