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Ligand clusters for UniProt code G0SDW4
Ligand clusters for G0SDW4: Uncharacterized protein OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=CTHT_0053230 PE=1 SV=1
6 ligand clusters
Cluster 1.
5 ligand types
9 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
1 ligand type
30 ligands
Cluster 4.
1 ligand type
30 ligands
Cluster 5.
1 ligand type
10 ligands
Cluster 6.
1 ligand type
10 ligands
Representative protein: 5kklB
Structures
PDB
Schematic diagram
5kkl
B
5bjs
B
5vk3
B
5tqr
B
5kji
B
more ...
Cluster 1 contains 5 ligand types
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Ligand
Description
1. Ligand:
SAM × 2
ademetionine
S-Adenosylmethionine
PDB codes:
5kkl
(B),
5tqr
(B).
2. Ligand:
SAH × 3
S-Adenosyl-L-Homocysteine
PDB codes:
5kjh
(B),
5kji
(B),
5m5g
(B).
3. Ligand:
A9G × 2
1-[(2s)-Butan-2-Yl]-N-[(4,6-Dimethyl-2-Oxo-1,2- Dihydropyridin-3-Yl)methyl]-3-Methyl-6-[6-
(Piperazin- 1-Yl)pyridin-3-Yl]-1h-Indole-4-Carboxamide
PDB codes:
5wf7
(B),
5wfd
(B).
4. Ligand:
A97 × 1
N-[(6-Methyl-2-Oxo-4-Propyl-1,2-Dihydropyridin-3-Yl) methyl]-6-[2-(4-Methylpiperazin-1-Yl)pyridin-
4-Yl]-1- (Propan-2-Yl)-1h-Indazole-4-Carboxamide
PDB code:
5wfc
(B).
5. Ligand:
VAL-MET-LEU-PRO-GLY-ARG-GLY-VAL-PRO × 1
PDB code:
5m5g
(B).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
LYS-ALA-ALA-ARG-M3L-SER-ALA-PRO × 2
M3L
=N-Trimethyllysine.
PDB codes:
5kjh
(B),
5m5g
(B).
2. Ligand:
ALA-ALA-ARG-M3L-SER-ALA-PRO-ALA × 1
M3L
=N-Trimethyllysine.
PDB code:
5kkl
(B).
Cluster 3 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 30
PDB codes:
5bjs
(B),
5kjh
(B),
5kji
(B),
5kkl
(B),
5m5g
(B),
5tqr
(B),
5vk3
(B),
5wf7
(B),
5wfc
(B),
5wfd
(B),
Cluster 4 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 30
PDB codes:
5bjs
(B),
5kjh
(B),
5kji
(B),
5kkl
(B),
5m5g
(B),
5tqr
(B),
5vk3
(B),
5wf7
(B),
5wfc
(B),
5wfd
(B),
Cluster 5 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 10
PDB codes:
5bjs
(B),
5kjh
(B),
5kji
(B),
5kkl
(B),
5m5g
(B),
5tqr
(B),
5vk3
(B),
5wf7
(B),
5wfc
(B),
5wfd
(B).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 10
PDB codes:
5bjs
(B),
5kjh
(B),
5kji
(B),
5kkl
(B),
5m5g
(B),
5tqr
(B),
5vk3
(B),
5wf7
(B),
5wfc
(B),
5wfd
(B).