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EBI
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PDBsum
Ligand clusters for UniProt code D2YW39
Ligand clusters for D2YW39: Snaclec rhodocetin subunit gamma (Fragment) from Calloselasma rhodostoma
Top 6 (of 12) ligand clusters
Cluster 1.
1 ligand type
1 ligand
Cluster 2.
1 ligand type
11 ligands
Cluster 3.
1 ligand type
10 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
2 ligands
Representative protein: 6nd8A
Structures
PDB
Schematic diagram
6nd8
A
6ndb
A
6ndd
A
5thp
D
6ndf
A
more ...
Cluster 1 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
5thp
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 11
Sulfate ion
PDB codes:
5thp
(D),
6nd8
(A),
6nd9
(A),
6nda
(A),
6ndb
(A),
6ndc
(A),
6ndd
(A),
6nde
(A),
6ndf
(A),
6ndg
(A),
6ndh
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 10
Sulfate ion
PDB codes:
6nd8
(A),
6nd9
(A),
6nda
(A),
6ndb
(A),
6ndc
(A),
6ndd
(A),
6nde
(A),
6ndf
(A),
6ndg
(A),
6ndh
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
6nd9
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 1
PDB code:
5thp
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 2
PDB codes:
5thp
(D),