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Ligand clusters for UniProt code D2YW39

Ligand clusters for D2YW39: Snaclec rhodocetin subunit gamma (Fragment) from Calloselasma rhodostoma

Top 6 (of 12) ligand clusters
Cluster 1.
1 ligand type
1 ligand
Cluster 2.
1 ligand type
11 ligands
Cluster 3.
1 ligand type
10 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
2 ligands
Representative protein: 6nd8A  
JSmol
 

Structures

PDB   Schematic diagram
6nd8A    
6ndbA    
6nddA    
5thpD    
6ndfA    
 more ...

 

 Cluster 1 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 5thp(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 11
Sulfate ion
PDB codes: 5thp(D), 6nd8(A), 6nd9(A), 6nda(A), 6ndb(A), 6ndc(A), 6ndd(A), 6nde(A), 6ndf(A), 6ndg(A), 6ndh(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 10
Sulfate ion
PDB codes: 6nd8(A), 6nd9(A), 6nda(A), 6ndb(A), 6ndc(A), 6ndd(A), 6nde(A), 6ndf(A), 6ndg(A), 6ndh(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 6nd9(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 1
PDB code: 5thp(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 2
PDB codes: 5thp(D),

 

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